Variant report

Variant	rs10882409
Chromosome Location	chr10:95988936-95988937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882405	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882407	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11187825	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187832	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1547643	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2860749	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2860750	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3980310	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4113810	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4388804	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4477375	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7069316	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7085875	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7098833	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7914268	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9325467	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9663515	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
3	chr10:95971000-95994000	Weak transcription	Gastric	stomach
4	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:95975200-95992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:95980600-95993800	Weak transcription	HSMMtube	muscle
8	chr10:95982400-95989200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:95982800-95992400	Weak transcription	Lung	lung
10	chr10:95983200-95993800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:95983400-95991400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:95984600-95995800	Weak transcription	Fetal Lung	lung
13	chr10:95984600-96000600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
15	chr10:95985000-95994800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:95985000-95995000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:95985600-95995000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:95985800-95989000	Weak transcription	A549	lung
19	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
21	chr10:95986000-95994800	Weak transcription	Adipose Nuclei	Adipose
22	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
23	chr10:95987000-95990400	Strong transcription	Fetal Intestine Small	intestine
24	chr10:95987000-95993800	Weak transcription	Fetal Brain Male	brain
25	chr10:95987000-95995000	Strong transcription	Fetal Stomach	stomach
26	chr10:95987000-95998600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:95987200-95989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:95987200-95989600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr10:95987600-95989000	Weak transcription	Spleen	Spleen
30	chr10:95987800-95989800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:95988000-95989400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:95988000-95992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:95988000-95997400	Weak transcription	Aorta	Aorta
34	chr10:95988200-95989000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:95988200-95992600	Weak transcription	Fetal Intestine Large	intestine
36	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
37	chr10:95988400-95990000	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:95988800-95989400	Enhancers	Ovary	ovary

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