Variant report

Variant	rs10882593
Chromosome Location	chr10:97190083-97190084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97189782..97190781-chr10:97360668..97361524,4	MCF-7	breast:
2	chr10:97189539..97192268-chr10:97195015..97197498,3	K562	blood:
3	chr10:97190067..97190847-chr6:20778531..20779371,2	MCF-7	breast:
4	chr10:97189856..97190852-chr10:97360581..97361516,9	MCF-7	breast:
5	chr10:97189854..97191679-chr10:97360563..97361585,11	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450393	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10748631	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786207	0.81[ASN][1000 genomes]
rs10786208	0.81[ASN][1000 genomes]
rs11188323	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12413990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536555	0.96[ASN][1000 genomes]
rs2025849	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2025850	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031765	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4918928	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918929	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs732101	0.81[ASN][1000 genomes]
rs732102	0.81[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
3	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
8	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
12	chr10:97180800-97195400	Weak transcription	Ovary	ovary
13	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
15	chr10:97182000-97190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:97183200-97194200	Weak transcription	HSMM	muscle
18	chr10:97183800-97190400	Strong transcription	Fetal Stomach	stomach
19	chr10:97184000-97190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:97185000-97190400	Weak transcription	Pancreas	Pancrea
21	chr10:97185800-97191600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:97186400-97190400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:97186600-97192800	Weak transcription	Fetal Kidney	kidney
25	chr10:97186600-97196200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:97186800-97193000	Weak transcription	Fetal Lung	lung
27	chr10:97187000-97191600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:97187200-97190400	Strong transcription	Brain Anterior Caudate	brain
29	chr10:97187200-97194000	Enhancers	Adipose Nuclei	Adipose
30	chr10:97187200-97205400	Weak transcription	K562	blood
31	chr10:97187400-97193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:97187600-97191800	Strong transcription	Aorta	Aorta
33	chr10:97187800-97190200	Enhancers	Colonic Mucosa	Colon
34	chr10:97187800-97190400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97187800-97193000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:97187800-97194400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97188400-97190400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:97188400-97190400	Strong transcription	Brain Germinal Matrix	brain
39	chr10:97188400-97193200	Enhancers	Fetal Heart	heart
40	chr10:97188600-97190400	Weak transcription	Stomach Mucosa	stomach
41	chr10:97188600-97190600	Genic enhancers	Fetal Intestine Small	intestine
42	chr10:97188600-97194200	Genic enhancers	Liver	Liver
43	chr10:97188800-97190200	Strong transcription	Rectal Smooth Muscle	rectum
44	chr10:97188800-97190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:97188800-97190400	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:97188800-97190400	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:97188800-97190400	Strong transcription	Left Ventricle	heart
48	chr10:97188800-97190600	Weak transcription	Right Ventricle	heart
49	chr10:97188800-97191000	Weak transcription	Fetal Brain Female	brain
50	chr10:97188800-97191200	Weak transcription	Gastric	stomach

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