Variant report

Variant	rs12413990
Chromosome Location	chr10:97188092-97188093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450393	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10748631	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786207	0.83[ASN][1000 genomes]
rs10786208	0.83[ASN][1000 genomes]
rs10882593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188323	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1536555	0.98[ASN][1000 genomes]
rs2025849	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2025850	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031765	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4918928	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918929	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs732101	0.83[ASN][1000 genomes]
rs732102	0.83[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
3	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97175000-97189800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
9	chr10:97176000-97189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:97178400-97188600	Strong transcription	Liver	Liver
14	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
15	chr10:97180800-97195400	Weak transcription	Ovary	ovary
16	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
18	chr10:97182000-97190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97183200-97194200	Weak transcription	HSMM	muscle
21	chr10:97183400-97188400	Weak transcription	Brain Germinal Matrix	brain
22	chr10:97183600-97188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:97183600-97188400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:97183800-97188400	Weak transcription	Brain Substantia Nigra	brain
25	chr10:97183800-97188600	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97183800-97189200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:97183800-97190000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:97183800-97190400	Strong transcription	Fetal Stomach	stomach
29	chr10:97184000-97188400	Weak transcription	Esophagus	oesophagus
30	chr10:97184000-97189800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:97184000-97190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:97184800-97188400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:97185000-97190400	Weak transcription	Pancreas	Pancrea
34	chr10:97185600-97189800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:97185800-97189800	Strong transcription	Placenta	Placenta
36	chr10:97185800-97191600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:97186200-97188200	Weak transcription	Fetal Brain Male	brain
39	chr10:97186200-97188200	Strong transcription	Fetal Intestine Large	intestine
40	chr10:97186200-97188800	Genic enhancers	Left Ventricle	heart
41	chr10:97186200-97188800	Enhancers	Right Atrium	heart
42	chr10:97186400-97190400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:97186600-97188400	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:97186600-97188800	Genic enhancers	Right Ventricle	heart
45	chr10:97186600-97192800	Weak transcription	Fetal Kidney	kidney
46	chr10:97186600-97196200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:97186800-97188400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:97186800-97188600	Strong transcription	Fetal Intestine Small	intestine
49	chr10:97186800-97188800	Genic enhancers	Rectal Smooth Muscle	rectum
50	chr10:97186800-97189000	Strong transcription	Lung	lung

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