Variant report

Variant	rs4918928
Chromosome Location	chr10:97189420-97189421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10450393	0.88[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10748631	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786207	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10786208	0.83[ASN][1000 genomes]
rs10882593	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882596	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11188323	0.93[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12413990	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327557	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1327558	0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1536555	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2025849	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2025850	0.93[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031765	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4918929	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918931	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4918933	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4918935	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6584001	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7086989	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7088765	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs732101	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs732102	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9633700	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
3	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97175000-97189800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
9	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
13	chr10:97180800-97195400	Weak transcription	Ovary	ovary
14	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
16	chr10:97182000-97190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:97183200-97194200	Weak transcription	HSMM	muscle
19	chr10:97183800-97190000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97183800-97190400	Strong transcription	Fetal Stomach	stomach
21	chr10:97184000-97189800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:97184000-97190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97185000-97190400	Weak transcription	Pancreas	Pancrea
24	chr10:97185600-97189800	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:97185800-97189800	Strong transcription	Placenta	Placenta
26	chr10:97185800-97191600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:97186400-97190400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:97186600-97192800	Weak transcription	Fetal Kidney	kidney
30	chr10:97186600-97196200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:97186800-97190000	Strong transcription	HepG2	liver
32	chr10:97186800-97193000	Weak transcription	Fetal Lung	lung
33	chr10:97187000-97189800	Weak transcription	GM12878-XiMat	blood
34	chr10:97187000-97191600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:97187200-97190400	Strong transcription	Brain Anterior Caudate	brain
36	chr10:97187200-97194000	Enhancers	Adipose Nuclei	Adipose
37	chr10:97187200-97205400	Weak transcription	K562	blood
38	chr10:97187400-97193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:97187600-97191800	Strong transcription	Aorta	Aorta
40	chr10:97187800-97190200	Enhancers	Colonic Mucosa	Colon
41	chr10:97187800-97190400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:97187800-97193000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:97187800-97194400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:97188400-97190400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:97188400-97190400	Strong transcription	Brain Germinal Matrix	brain
46	chr10:97188400-97193200	Enhancers	Fetal Heart	heart
47	chr10:97188600-97190400	Weak transcription	Stomach Mucosa	stomach
48	chr10:97188600-97190600	Genic enhancers	Fetal Intestine Small	intestine
49	chr10:97188600-97194200	Genic enhancers	Liver	Liver
50	chr10:97188800-97189600	Strong transcription	HSMMtube	muscle

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