Variant report

Variant	rs732101
Chromosome Location	chr10:97192452-97192453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97190432..97193993-chr10:97195559..97198932,4	K562	blood:
2	chr10:97191737..97193767-chr10:97199303..97201968,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10450393	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10736088	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748631	0.83[ASN][1000 genomes]
rs10786207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786208	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786211	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882593	0.81[ASN][1000 genomes]
rs10882594	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882595	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882597	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882598	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188323	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12413990	0.83[ASN][1000 genomes]
rs1327557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1327558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1536555	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2025849	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2025850	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[ASN][1000 genomes]
rs2031765	0.96[ASN][1000 genomes]
rs4917688	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918928	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4918929	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4918931	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918932	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918934	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918935	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918936	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6584001	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7086989	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7088765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs732102	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
6	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
9	chr10:97180800-97195400	Weak transcription	Ovary	ovary
10	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
12	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:97183200-97194200	Weak transcription	HSMM	muscle
14	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:97186600-97192800	Weak transcription	Fetal Kidney	kidney
16	chr10:97186600-97196200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:97186800-97193000	Weak transcription	Fetal Lung	lung
18	chr10:97187200-97194000	Enhancers	Adipose Nuclei	Adipose
19	chr10:97187200-97205400	Weak transcription	K562	blood
20	chr10:97187400-97193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:97187800-97193000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:97187800-97194400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:97188400-97193200	Enhancers	Fetal Heart	heart
24	chr10:97188600-97194200	Genic enhancers	Liver	Liver
25	chr10:97188800-97195000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
27	chr10:97189600-97196000	Weak transcription	HSMMtube	muscle
28	chr10:97189800-97192600	Enhancers	GM12878-XiMat	blood
29	chr10:97190000-97192600	Enhancers	Right Atrium	heart
30	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
31	chr10:97190400-97192600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:97190400-97193400	Genic enhancers	Left Ventricle	heart
33	chr10:97190400-97195800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr10:97190600-97193400	Weak transcription	Spleen	Spleen
35	chr10:97190600-97195000	Enhancers	Right Ventricle	heart
36	chr10:97190600-97195200	Weak transcription	Pancreas	Pancrea
37	chr10:97190600-97195400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:97190600-97200400	Strong transcription	Fetal Intestine Small	intestine
39	chr10:97190800-97193000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:97190800-97193000	Weak transcription	Fetal Brain Male	brain
41	chr10:97190800-97193600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:97190800-97195600	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:97191000-97192800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:97191000-97193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:97191000-97193600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:97191000-97194600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:97191000-97199400	Weak transcription	Stomach Mucosa	stomach
50	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum

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