Variant report

Variant	rs10882598
Chromosome Location	chr10:97202984-97202985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450393	0.90[ASN][1000 genomes]
rs10736088	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786207	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786208	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786209	0.82[ASN][1000 genomes]
rs10786211	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882594	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882595	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882596	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882597	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188323	0.95[ASN][1000 genomes]
rs1327557	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327558	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025849	0.93[ASN][1000 genomes]
rs2025850	0.93[ASN][1000 genomes]
rs2031765	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4917688	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918929	0.93[ASN][1000 genomes]
rs4918931	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918932	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918933	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918934	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918935	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918936	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6584001	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7086989	0.95[ASN][1000 genomes]
rs7088765	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732101	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732102	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9633700	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
4	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97187200-97205400	Weak transcription	K562	blood
6	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
7	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
8	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97195200-97204400	Weak transcription	Fetal Brain Male	brain
13	chr10:97195400-97204800	Weak transcription	Fetal Lung	lung
14	chr10:97195800-97204800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:97195800-97204800	Weak transcription	Spleen	Spleen
16	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:97196000-97204600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:97197400-97204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:97197400-97204600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:97197400-97204600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:97197400-97204800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:97197400-97204800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:97197400-97204800	Weak transcription	HSMMtube	muscle
24	chr10:97197600-97204600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:97197600-97204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain
28	chr10:97197800-97204200	Enhancers	Fetal Heart	heart
29	chr10:97197800-97204600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:97198200-97204800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97198400-97207600	Weak transcription	Fetal Brain Female	brain
32	chr10:97198800-97204600	Weak transcription	Lung	lung
33	chr10:97198800-97205800	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:97199200-97204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:97199600-97204600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:97200200-97208800	Enhancers	Colon Smooth Muscle	Colon
37	chr10:97200400-97203800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:97200400-97204600	Weak transcription	Placenta	Placenta
39	chr10:97200400-97205200	Weak transcription	Fetal Intestine Small	intestine
40	chr10:97200600-97203200	Enhancers	Left Ventricle	heart
41	chr10:97200800-97203600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:97200800-97206800	Enhancers	HepG2	liver
43	chr10:97201200-97204800	Weak transcription	Right Atrium	heart
44	chr10:97201400-97203000	Enhancers	Gastric	stomach
45	chr10:97201400-97203200	Weak transcription	Liver	Liver
46	chr10:97201400-97204600	Weak transcription	Fetal Stomach	stomach
47	chr10:97201400-97207400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:97201600-97204400	Weak transcription	Brain Angular Gyrus	brain
49	chr10:97201600-97204600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:97201600-97204800	Weak transcription	Pancreas	Pancrea

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