Variant report

Variant	rs6584001
Chromosome Location	chr10:97211254-97211255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97210894..97213718-chr10:97224956..97226923,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10450393	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10736088	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786207	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786208	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786209	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10786211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882594	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882595	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882596	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882597	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882598	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188323	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1327557	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1327558	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1536555	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs2025849	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2025850	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2031765	0.97[ASN][1000 genomes]
rs4917688	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918928	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4918929	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4918931	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918932	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918934	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918936	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086989	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7088765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs732101	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs732102	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9633700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97217000	Weak transcription	Gastric	stomach
2	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:97206600-97211400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:97208200-97216200	Weak transcription	Lung	lung
7	chr10:97208200-97219000	Weak transcription	Ovary	ovary
8	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
9	chr10:97208600-97211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:97208600-97212200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:97208800-97215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:97208800-97215800	Weak transcription	Fetal Kidney	kidney
14	chr10:97209200-97215600	Weak transcription	Right Ventricle	heart
15	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:97209800-97213000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97210000-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
19	chr10:97210200-97211800	Enhancers	Psoas Muscle	Psoas
20	chr10:97210600-97211600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr10:97210600-97212200	Enhancers	Fetal Stomach	stomach
22	chr10:97210800-97211400	Enhancers	Fetal Brain Female	brain
23	chr10:97210800-97211400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr10:97210800-97211400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr10:97210800-97211800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:97210800-97211800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:97210800-97211800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:97210800-97211800	Enhancers	Brain Anterior Caudate	brain
29	chr10:97210800-97211800	Enhancers	Fetal Muscle Leg	muscle
30	chr10:97210800-97212200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:97210800-97212200	Enhancers	Liver	Liver
32	chr10:97210800-97212200	Enhancers	Fetal Brain Male	brain
33	chr10:97210800-97212200	Enhancers	Fetal Lung	lung
34	chr10:97210800-97212400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:97210800-97212400	Enhancers	HMEC	breast
36	chr10:97210800-97212800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:97210800-97212800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:97210800-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:97211000-97211400	Enhancers	Brain Angular Gyrus	brain
40	chr10:97211000-97211400	Enhancers	Brain Germinal Matrix	brain
41	chr10:97211000-97211600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:97211000-97211600	Enhancers	Fetal Intestine Large	intestine
43	chr10:97211000-97211600	Flanking Active TSS	HepG2	liver
44	chr10:97211000-97211800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr10:97211000-97212000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:97211000-97212200	Enhancers	Aorta	Aorta
47	chr10:97211000-97212200	Enhancers	NHEK	skin
48	chr10:97211000-97213000	Enhancers	Left Ventricle	heart
49	chr10:97211200-97211400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:97211200-97211400	Flanking Active TSS	Fetal Heart	heart

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