Variant report

Variant	rs1536555
Chromosome Location	chr10:97184134-97184135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10430659	0.81[AMR][1000 genomes]
rs10450393	0.93[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs10748631	0.98[ASN][1000 genomes]
rs10786207	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs10786208	0.81[ASN][1000 genomes]
rs10882593	0.96[ASN][1000 genomes]
rs10882596	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs11188323	0.90[JPT][hapmap]
rs12413990	0.98[ASN][1000 genomes]
rs1327557	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs1327558	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs2025849	0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2025850	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4917688	0.86[EUR][1000 genomes]
rs4918928	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4918929	0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4918931	0.88[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs4918933	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs4918935	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs6584001	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs7086989	0.93[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap]
rs7088765	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs732101	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs732102	0.84[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9633700	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
3	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
6	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:97173600-97185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:97175000-97189800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:97175800-97187200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
15	chr10:97176000-97189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:97178400-97188600	Strong transcription	Liver	Liver
20	chr10:97178600-97184400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:97178800-97184800	Strong transcription	Placenta	Placenta
22	chr10:97178800-97186200	Strong transcription	HepG2	liver
23	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
24	chr10:97179200-97187200	Strong transcription	HSMMtube	muscle
25	chr10:97180200-97186200	Enhancers	Fetal Brain Male	brain
26	chr10:97180400-97184200	Strong transcription	Fetal Intestine Small	intestine
27	chr10:97180800-97195400	Weak transcription	Ovary	ovary
28	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:97181400-97185000	Weak transcription	K562	blood
30	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
31	chr10:97182000-97190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:97183000-97184800	Genic enhancers	Left Ventricle	heart
34	chr10:97183000-97186200	Enhancers	Fetal Heart	heart
35	chr10:97183200-97184200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97183200-97184800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr10:97183200-97184800	Genic enhancers	Rectal Smooth Muscle	rectum
38	chr10:97183200-97194200	Weak transcription	HSMM	muscle
39	chr10:97183400-97184200	Strong transcription	Pancreas	Pancrea
40	chr10:97183400-97188400	Weak transcription	Brain Germinal Matrix	brain
41	chr10:97183600-97186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:97183600-97187200	Weak transcription	Adipose Nuclei	Adipose
43	chr10:97183600-97187800	Weak transcription	Colonic Mucosa	Colon
44	chr10:97183600-97188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:97183600-97188400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:97183800-97185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:97183800-97185600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:97183800-97186200	Weak transcription	GM12878-XiMat	blood
49	chr10:97183800-97186600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:97183800-97187600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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