Variant report

Variant	rs10882596
Chromosome Location	chr10:97200044-97200045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10450393	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10736088	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786209	0.83[ASN][1000 genomes]
rs10786211	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882597	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882598	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188323	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1327557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536555	0.85[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs2025849	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs2025850	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs2031765	1.00[ASN][1000 genomes]
rs4917688	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918928	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4918929	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs4918931	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918934	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918936	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7086989	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7088765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs732102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9633700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
4	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97187200-97205400	Weak transcription	K562	blood
6	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
7	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
8	chr10:97190600-97200400	Strong transcription	Fetal Intestine Small	intestine
9	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:97193800-97200600	Strong transcription	Fetal Intestine Large	intestine
14	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:97194800-97200400	Genic enhancers	Left Ventricle	heart
16	chr10:97195200-97204400	Weak transcription	Fetal Brain Male	brain
17	chr10:97195400-97200800	Strong transcription	Fetal Stomach	stomach
18	chr10:97195400-97204800	Weak transcription	Fetal Lung	lung
19	chr10:97195600-97200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:97195800-97204800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:97195800-97204800	Weak transcription	Spleen	Spleen
22	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97196000-97204600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:97197000-97200200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:97197400-97200800	Weak transcription	Brain Anterior Caudate	brain
26	chr10:97197400-97200800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97197400-97204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:97197400-97204600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97197400-97204600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:97197400-97204800	Weak transcription	Brain Substantia Nigra	brain
31	chr10:97197400-97204800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97197400-97204800	Weak transcription	HSMMtube	muscle
33	chr10:97197600-97200400	Enhancers	Right Ventricle	heart
34	chr10:97197600-97201000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:97197600-97201400	Weak transcription	Gastric	stomach
36	chr10:97197600-97202800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97197600-97204600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:97197600-97204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain
41	chr10:97197800-97204200	Enhancers	Fetal Heart	heart
42	chr10:97197800-97204600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97198200-97200400	Enhancers	Placenta	Placenta
44	chr10:97198200-97204800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97198400-97207600	Weak transcription	Fetal Brain Female	brain
46	chr10:97198800-97202800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:97198800-97204600	Weak transcription	Lung	lung
48	chr10:97198800-97205800	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:97199200-97200600	Enhancers	Right Atrium	heart
50	chr10:97199200-97204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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