Variant report

Variant	rs2025849
Chromosome Location	chr10:97195612-97195613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97189539..97192268-chr10:97195015..97197498,3	K562	blood:
2	chr10:97190432..97193993-chr10:97195559..97198932,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10450393	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736088	0.92[ASN][1000 genomes]
rs10748631	0.83[ASN][1000 genomes]
rs10786207	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs10786208	1.00[ASN][1000 genomes]
rs10786209	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10786211	0.92[ASN][1000 genomes]
rs10882593	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882594	0.94[ASN][1000 genomes]
rs10882595	0.97[ASN][1000 genomes]
rs10882596	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs10882597	0.97[ASN][1000 genomes]
rs10882598	0.93[ASN][1000 genomes]
rs11188323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413990	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1327557	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1327558	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs1536555	0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2025850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031765	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917688	0.97[ASN][1000 genomes]
rs4918928	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918931	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4918932	0.97[ASN][1000 genomes]
rs4918933	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]
rs4918934	0.88[ASN][1000 genomes]
rs4918935	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4918936	0.92[ASN][1000 genomes]
rs6584001	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7086989	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088765	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs732101	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs732102	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[ASN][1000 genomes]
rs9633700	0.84[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2025849	ARHGAP19	cis	parietal	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
6	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
9	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:97186600-97196200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:97187200-97205400	Weak transcription	K562	blood
13	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
14	chr10:97189600-97196000	Weak transcription	HSMMtube	muscle
15	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
16	chr10:97190400-97195800	Genic enhancers	Fetal Muscle Leg	muscle
17	chr10:97190600-97200400	Strong transcription	Fetal Intestine Small	intestine
18	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:97191000-97199400	Weak transcription	Stomach Mucosa	stomach
21	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:97191800-97198000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:97192000-97200000	Strong transcription	HepG2	liver
24	chr10:97193000-97196400	Enhancers	Right Atrium	heart
25	chr10:97193400-97195800	Enhancers	Spleen	Spleen
26	chr10:97193400-97197600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:97193600-97196000	Genic enhancers	Fetal Brain Female	brain
29	chr10:97193800-97200600	Strong transcription	Fetal Intestine Large	intestine
30	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97194400-97197600	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97194400-97198800	Genic enhancers	Rectal Smooth Muscle	rectum
33	chr10:97194800-97196200	Genic enhancers	Lung	lung
34	chr10:97194800-97197200	Strong transcription	Aorta	Aorta
35	chr10:97194800-97200400	Genic enhancers	Left Ventricle	heart
36	chr10:97195000-97195800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:97195000-97195800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:97195000-97196000	Enhancers	Adipose Nuclei	Adipose
39	chr10:97195000-97196000	Genic enhancers	Brain Anterior Caudate	brain
40	chr10:97195000-97196200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:97195000-97197600	Genic enhancers	Right Ventricle	heart
42	chr10:97195000-97199600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:97195000-97200000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:97195200-97195800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:97195200-97195800	Strong transcription	Pancreas	Pancrea
46	chr10:97195200-97196200	Genic enhancers	Gastric	stomach
47	chr10:97195200-97196600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97195200-97196600	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:97195200-97197600	Strong transcription	Brain Angular Gyrus	brain
50	chr10:97195200-97197600	Strong transcription	Brain Germinal Matrix	brain

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