Variant report

Variant	rs10786209
Chromosome Location	chr10:97210264-97210265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97208296..97210918-chr10:97214931..97216781,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10450393	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10786207	0.80[ASN][1000 genomes]
rs10786208	0.80[ASN][1000 genomes]
rs10786211	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10882594	0.83[ASN][1000 genomes]
rs10882595	0.83[ASN][1000 genomes]
rs10882596	0.83[ASN][1000 genomes]
rs10882597	0.83[ASN][1000 genomes]
rs10882598	0.82[ASN][1000 genomes]
rs11188323	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1327557	0.83[ASN][1000 genomes]
rs1327558	0.83[ASN][1000 genomes]
rs2025849	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2025850	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2031765	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917688	0.83[ASN][1000 genomes]
rs4918929	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918931	0.83[ASN][1000 genomes]
rs4918932	0.83[ASN][1000 genomes]
rs4918933	0.83[ASN][1000 genomes]
rs4918934	0.80[ASN][1000 genomes]
rs4918935	0.84[ASN][1000 genomes]
rs4918936	0.84[ASN][1000 genomes]
rs6584001	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7086989	0.83[ASN][1000 genomes]
rs7088765	0.83[ASN][1000 genomes]
rs9633700	0.82[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv512178	chr10:97206985-97210791	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:97205200-97211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:97206000-97210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97206000-97210800	Weak transcription	Brain Anterior Caudate	brain
5	chr10:97206000-97210800	Weak transcription	Fetal Brain Male	brain
6	chr10:97206000-97217000	Weak transcription	Gastric	stomach
7	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:97206200-97210800	Enhancers	Fetal Heart	heart
9	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:97206600-97211000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:97206600-97211400	Weak transcription	Fetal Intestine Small	intestine
12	chr10:97208000-97210800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:97208000-97210800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:97208000-97211000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:97208200-97210800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:97208200-97210800	Weak transcription	Fetal Lung	lung
18	chr10:97208200-97216200	Weak transcription	Lung	lung
19	chr10:97208200-97219000	Weak transcription	Ovary	ovary
20	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
21	chr10:97208400-97210800	Weak transcription	Liver	Liver
22	chr10:97208400-97210800	Weak transcription	Fetal Brain Female	brain
23	chr10:97208400-97211000	Weak transcription	Brain Angular Gyrus	brain
24	chr10:97208400-97211200	Weak transcription	Brain Substantia Nigra	brain
25	chr10:97208600-97210800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:97208600-97210800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:97208600-97211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:97208600-97211000	Weak transcription	NHEK	skin
29	chr10:97208600-97211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:97208600-97212200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:97208800-97210800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:97208800-97210800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:97208800-97210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:97208800-97210800	Enhancers	Stomach Smooth Muscle	stomach
36	chr10:97208800-97210800	Weak transcription	HMEC	breast
37	chr10:97208800-97211000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:97208800-97215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97208800-97215800	Weak transcription	Fetal Kidney	kidney
40	chr10:97209200-97210800	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:97209200-97210800	Weak transcription	Right Atrium	heart
42	chr10:97209200-97211000	Weak transcription	Left Ventricle	heart
43	chr10:97209200-97215600	Weak transcription	Right Ventricle	heart
44	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:97209800-97211000	Enhancers	HepG2	liver
46	chr10:97209800-97213000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:97210000-97210800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:97210000-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
50	chr10:97210200-97210400	Enhancers	Aorta	Aorta

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