Variant report

Variant	rs7086989
Chromosome Location	chr10:97200444-97200445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10450393	0.83[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736088	0.95[ASN][1000 genomes]
rs10748631	0.85[EUR][1000 genomes]
rs10786207	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10786208	0.97[ASN][1000 genomes]
rs10786209	0.83[ASN][1000 genomes]
rs10786211	0.95[ASN][1000 genomes]
rs10882594	0.97[ASN][1000 genomes]
rs10882595	1.00[ASN][1000 genomes]
rs10882596	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10882597	1.00[ASN][1000 genomes]
rs10882598	0.95[ASN][1000 genomes]
rs11188323	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327557	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1327558	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1536555	0.93[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap]
rs2025849	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2025850	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031765	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917688	1.00[ASN][1000 genomes]
rs4918928	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4918929	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918931	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4918932	1.00[ASN][1000 genomes]
rs4918933	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4918934	0.91[ASN][1000 genomes]
rs4918935	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4918936	0.95[ASN][1000 genomes]
rs6584001	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7088765	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs732101	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs732102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9633700	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
4	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97187200-97205400	Weak transcription	K562	blood
6	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
7	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
8	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:97193800-97200600	Strong transcription	Fetal Intestine Large	intestine
13	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97195200-97204400	Weak transcription	Fetal Brain Male	brain
15	chr10:97195400-97200800	Strong transcription	Fetal Stomach	stomach
16	chr10:97195400-97204800	Weak transcription	Fetal Lung	lung
17	chr10:97195600-97200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:97195800-97204800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:97195800-97204800	Weak transcription	Spleen	Spleen
20	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97196000-97204600	Weak transcription	Adipose Nuclei	Adipose
22	chr10:97197400-97200800	Weak transcription	Brain Anterior Caudate	brain
23	chr10:97197400-97200800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97197400-97204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:97197400-97204600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:97197400-97204600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:97197400-97204800	Weak transcription	Brain Substantia Nigra	brain
28	chr10:97197400-97204800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:97197400-97204800	Weak transcription	HSMMtube	muscle
30	chr10:97197600-97201000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:97197600-97201400	Weak transcription	Gastric	stomach
32	chr10:97197600-97202800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:97197600-97204600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:97197600-97204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain
37	chr10:97197800-97204200	Enhancers	Fetal Heart	heart
38	chr10:97197800-97204600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:97198200-97204800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:97198400-97207600	Weak transcription	Fetal Brain Female	brain
41	chr10:97198800-97202800	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:97198800-97204600	Weak transcription	Lung	lung
43	chr10:97198800-97205800	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:97199200-97200600	Enhancers	Right Atrium	heart
45	chr10:97199200-97204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97199400-97201600	Enhancers	Stomach Mucosa	stomach
47	chr10:97199600-97204600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:97200000-97201600	Enhancers	Brain Angular Gyrus	brain
49	chr10:97200000-97201600	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:97200000-97201600	Enhancers	Pancreas	Pancrea

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