Variant report

Variant	rs1327558
Chromosome Location	chr10:97204862-97204863
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:97204732-97206132	A549	lung:	n/a	chr10:97205802-97205810 chr10:97205797-97205815 chr10:97205798-97205814 chr10:97205792-97205813
2	FOS	chr10:97204784-97205436	HUVEC	blood vessel:	n/a	n/a
3	NFIC	chr10:97204806-97206134	SK-N-SH	brain:	n/a	chr10:97205771-97205787 chr10:97205770-97205787
4	NFIC	chr10:97204823-97206176	ECC-1	luminal epithelium:	n/a	chr10:97205771-97205787 chr10:97205770-97205787
5	NFIC	chr10:97204859-97206090	ECC-1	luminal epithelium:	n/a	chr10:97205771-97205787 chr10:97205770-97205787

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97204685..97206327-chr10:97285189..97287313,2	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10450393	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10736088	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786209	0.83[ASN][1000 genomes]
rs10786211	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882594	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882598	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188323	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1327557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536555	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs2025849	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2025850	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2031765	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4917688	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918928	0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4918929	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4918931	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918932	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918934	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918936	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7086989	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7088765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732101	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs732102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9633700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:97187200-97205400	Weak transcription	K562	blood
4	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
5	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
6	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain
12	chr10:97198400-97207600	Weak transcription	Fetal Brain Female	brain
13	chr10:97198800-97205800	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:97200200-97208800	Enhancers	Colon Smooth Muscle	Colon
15	chr10:97200400-97205200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:97200800-97206800	Enhancers	HepG2	liver
17	chr10:97201400-97207400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:97201600-97207400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:97202400-97205000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:97202400-97205800	Weak transcription	Fetal Intestine Large	intestine
21	chr10:97202800-97209200	Enhancers	Fetal Muscle Leg	muscle
22	chr10:97203200-97208400	Enhancers	Liver	Liver
23	chr10:97203800-97209400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:97204000-97205600	Enhancers	Psoas Muscle	Psoas
25	chr10:97204000-97208600	Enhancers	Left Ventricle	heart
26	chr10:97204200-97206000	Enhancers	Brain Anterior Caudate	brain
27	chr10:97204400-97206000	Enhancers	Fetal Brain Male	brain
28	chr10:97204400-97206400	Enhancers	Brain Angular Gyrus	brain
29	chr10:97204600-97205000	Enhancers	HSMM	muscle
30	chr10:97204600-97205200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr10:97204600-97205200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:97204600-97205200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:97204600-97205200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:97204600-97205200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:97204600-97205200	Enhancers	HUVEC	blood vessel
36	chr10:97204600-97205400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:97204600-97206000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:97204600-97206000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:97204600-97206000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:97204600-97206200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:97204600-97206200	Enhancers	HMEC	breast
42	chr10:97204600-97206400	Enhancers	Brain Cingulate Gyrus	brain
43	chr10:97204600-97208200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr10:97204600-97208200	Enhancers	Placenta	Placenta
45	chr10:97204600-97208200	Enhancers	Lung	lung
46	chr10:97204600-97208600	Enhancers	Adipose Nuclei	Adipose
47	chr10:97204600-97208600	Enhancers	Fetal Stomach	stomach
48	chr10:97204600-97208800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr10:97204800-97205000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr10:97204800-97205000	Flanking Active TSS	Aorta	Aorta

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