Variant report

Variant	rs10893741
Chromosome Location	chr11:127637908-127637909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10893727	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10893728	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10893739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893750	0.96[ASN][1000 genomes]
rs10893752	0.96[ASN][1000 genomes]
rs10893754	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221020	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11221033	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221034	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11221037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221044	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221047	0.96[ASN][1000 genomes]
rs11221048	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221049	0.95[ASN][1000 genomes]
rs11221055	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221056	0.96[ASN][1000 genomes]
rs12791553	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12800826	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1364789	0.96[ASN][1000 genomes]
rs1425218	0.96[ASN][1000 genomes]
rs1425219	0.96[ASN][1000 genomes]
rs1425220	0.96[ASN][1000 genomes]
rs1425221	0.96[ASN][1000 genomes]
rs34815995	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61908319	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs970534	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3467175	chr11:127622433-127656116	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3467197	chr11:127622467-127656115	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3467186	chr11:127622501-127656078	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3467208	chr11:127622501-127656078	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv1816529	chr11:127623438-127655008	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv1819125	chr11:127623438-127656815	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1818616	chr11:127625130-127653770	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1822544	chr11:127631883-127658538	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1820570	chr11:127634121-127653948	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1816272	chr11:127634133-127653960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	esv1817427	chr11:127634133-127653960	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10893741	ESAM	cis	parietal	SCAN
rs10893741	OR10S1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127634000-127638800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:127636600-127638600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:127636800-127638200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:127637000-127638200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:127637000-127638200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:127637000-127639800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:127637200-127638200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:127637400-127638400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:127637600-127638000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:127637600-127638000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:127637800-127644800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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