Variant report

Variant	rs12791553
Chromosome Location	chr11:127657683-127657684
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10893727	0.85[ASN][1000 genomes]
rs10893728	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10893739	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10893741	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10893750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893752	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893754	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221020	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11221033	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11221034	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11221036	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11221037	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221044	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221047	1.00[ASN][1000 genomes]
rs11221048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221049	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11221055	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221056	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800826	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364789	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425218	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425219	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425220	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425221	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815995	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61908319	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970534	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1822544	chr11:127631883-127658538	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127652800-127660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:127655000-127660000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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