Variant report

Variant	rs1425219
Chromosome Location	chr11:127674261-127674262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10893727	0.85[ASN][1000 genomes]
rs10893728	0.85[ASN][1000 genomes]
rs10893739	0.96[ASN][1000 genomes]
rs10893741	0.96[ASN][1000 genomes]
rs10893750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893752	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893754	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221020	0.85[ASN][1000 genomes]
rs11221033	0.92[ASN][1000 genomes]
rs11221034	0.92[ASN][1000 genomes]
rs11221036	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11221037	0.96[ASN][1000 genomes]
rs11221044	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221047	1.00[ASN][1000 genomes]
rs11221048	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221049	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11221055	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791553	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800826	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364789	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425218	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425220	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425221	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815995	0.99[ASN][1000 genomes]
rs61908319	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970534	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526723	chr11:127671315-127796350	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127672200-127674600	Enhancers	Fetal Intestine Large	intestine
2	chr11:127672400-127678800	Enhancers	Fetal Intestine Small	intestine
3	chr11:127674000-127674400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:127674200-127675400	Weak transcription	Rectal Mucosa Donor 29	rectum

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