Variant report

Variant	rs11221048
Chromosome Location	chr11:127660188-127660189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:127658803..127660673-chr11:127663935..127666199,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10893727	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10893728	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10893739	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10893741	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10893750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893752	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221020	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11221033	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11221034	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11221036	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11221037	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221047	1.00[ASN][1000 genomes]
rs11221049	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11221055	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221056	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364789	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425218	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425219	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425220	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425221	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815995	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61908319	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970534	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127659600-127660400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr11:127659800-127660400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:127659800-127660800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:127660000-127660400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:127660000-127660400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:127660000-127660600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:127660000-127660600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:127660000-127660800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:127660000-127660800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:127660000-127660800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:127660000-127661400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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