Variant report

Variant	rs10893754
Chromosome Location	chr11:127675049-127675050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10893727	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10893728	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10893739	0.96[ASN][1000 genomes]
rs10893741	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10893750	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10893752	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221020	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11221033	0.92[ASN][1000 genomes]
rs11221034	0.92[ASN][1000 genomes]
rs11221036	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11221037	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11221044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221047	1.00[ASN][1000 genomes]
rs11221048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221049	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11221055	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11221056	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364789	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425218	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425219	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425220	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425221	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815995	0.99[ASN][1000 genomes]
rs61908319	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970534	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526723	chr11:127671315-127796350	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127672400-127678800	Enhancers	Fetal Intestine Small	intestine
2	chr11:127674200-127675400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:127674400-127676200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:127674600-127675200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:127674600-127675400	Enhancers	Liver	Liver
6	chr11:127674600-127676600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:127674800-127675200	Enhancers	Colon Smooth Muscle	Colon
8	chr11:127674800-127675600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:127674800-127675800	Weak transcription	Fetal Kidney	kidney
10	chr11:127674800-127676200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:127675000-127675400	Active TSS	Rectal Smooth Muscle	rectum
12	chr11:127675000-127675600	Enhancers	Fetal Stomach	stomach
13	chr11:127675000-127676800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:127675000-127678800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links