Variant report

Variant	rs10910713
Chromosome Location	chr1:145040296-145040297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr1:145038219-145040792	HepG2	liver:	n/a	n/a
2	ZMIZ1	chr1:145038485-145041708	K562	blood:	n/a	n/a
3	BACH1	chr1:145040155-145043641	K562	blood:	n/a	n/a
4	ZC3H11A	chr1:145038377-145043739	K562	blood:	n/a	n/a
5	RCOR1	chr1:145039029-145041250	HepG2	liver:	n/a	n/a
6	MAX	chr1:145038572-145040566	GM12878	blood:	n/a	n/a
7	ZBTB7A	chr1:145039036-145040679	ECC-1	luminal epithelium:	n/a	n/a
8	TBL1XR1	chr1:145038330-145041797	K562	blood:	n/a	n/a
9	CCNT2	chr1:145038414-145040351	K562	blood:	n/a	chr1:145039526-145039535 chr1:145038773-145038782 chr1:145040082-145040091
10	SIN3AK20	chr1:145038921-145040451	H1-hESC	embryonic stem cell:	n/a	n/a
11	NR2F2	chr1:145038227-145040681	K562	blood:	n/a	n/a
12	TAF1	chr1:145038640-145040520	H1-neurons	neurons:	n/a	n/a
13	TCF7L2	chr1:145039014-145041436	PANC-1	pancreas:	n/a	chr1:145039218-145039234
14	CUX1	chr1:145040246-145041910	K562	blood:	n/a	n/a
15	POLR2A	chr1:145039519-145040315	SK-N-MC	brain:	n/a	n/a
16	CHD2	chr1:145038967-145040580	GM12878	blood:	n/a	n/a
17	REST	chr1:145038766-145040778	H1-neurons	neurons:	n/a	chr1:145040398-145040411
18	SIN3AK20	chr1:145039546-145040331	PANC-1	pancreas:	n/a	n/a
19	MXI1	chr1:145038150-145043822	SK-N-SH	brain:	n/a	n/a
20	WRNIP1	chr1:145039000-145040667	GM12878	blood:	n/a	n/a
21	RAD21	chr1:145038828-145040754	H1-hESC	embryonic stem cell:	n/a	chr1:145040121-145040133 chr1:145040121-145040131
22	MXI1	chr1:145038628-145041595	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr1:145040280-145040430	GM12875	blood:	n/a	n/a
24	POLR2A	chr1:145038782-145040618	H1-neurons	neurons:	n/a	n/a
25	KAT2A	chr1:145039900-145041097	GM12878	blood:	n/a	n/a
26	MAZ	chr1:145038320-145041587	K562	blood:	n/a	n/a
27	E2F4	chr1:145039598-145040740	MCF10A-Er-Src	breast:	n/a	chr1:145040003-145040012
28	MAX	chr1:145038887-145040797	NB4	blood:	n/a	n/a
29	MYC	chr1:145038606-145040432	K562	blood:	n/a	n/a
30	RCOR1	chr1:145038335-145041586	K562	blood:	n/a	n/a
31	SIN3A	chr1:145038280-145041589	H1-hESC	embryonic stem cell:	n/a	chr1:145040398-145040411
32	TCF12	chr1:145039685-145040353	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr1:145038946-145040340	PBDE	blood:	n/a	n/a
34	RFX5	chr1:145038232-145041194	HepG2	liver:	n/a	chr1:145039967-145039980 chr1:145039967-145039981
35	TEAD4	chr1:145039448-145040363	H1-hESC	embryonic stem cell:	n/a	n/a
36	ELK1	chr1:145039071-145040843	GM12878	blood:	n/a	n/a
37	HA-E2F1	chr1:145038198-145040713	MCF-7	breast:	n/a	chr1:145040003-145040012
38	POLR2A	chr1:145038403-145040868	U87	brain:	n/a	n/a
39	MAX	chr1:145038864-145040746	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD2	chr1:145038359-145040725	K562	blood:	n/a	n/a
41	RUNX3	chr1:145039281-145040620	GM12878	blood:	n/a	n/a
42	YY1	chr1:145039468-145040413	H1-hESC	embryonic stem cell:	n/a	chr1:145039526-145039537
43	SIN3AK20	chr1:145039294-145040410	H1-hESC	embryonic stem cell:	n/a	n/a
44	TCF12	chr1:145038897-145040555	ECC-1	luminal epithelium:	n/a	n/a
45	SMC3	chr1:145038957-145041497	K562	blood:	n/a	chr1:145040117-145040131 chr1:145039486-145039494
46	MAX	chr1:145039212-145040680	A549	lung:	n/a	n/a
47	MAX	chr1:145039341-145040568	MCF-7	breast:	n/a	n/a
48	NRF1	chr1:145039596-145040328	GM12878	blood:	n/a	n/a
49	ELK1	chr1:145040114-145041450	Hela-S3	cervix:	n/a	n/a
50	EBF1	chr1:145039148-145040491	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:144930600..144932534-chr1:145038038..145040681,2	MCF-7	breast:
2	chr1:144931123..144933767-chr1:145038053..145040746,4	MCF-7	breast:
3	chr1:144993668..144997286-chr1:145038559..145041171,3	MCF-7	breast:
4	chr1:144532529..144536488-chr1:145037438..145042371,7	K562	blood:
5	chr1:144987747..144991931-chr1:145038647..145042138,3	MCF-7	breast:
6	chr1:144533474..144535721-chr1:145039954..145042434,2	K562	blood:
7	chr1:145038465..145040335-chr1:145073529..145077328,4	MCF-7	breast:

Variant related genes	Relation type
PDE4DIP	TF binding region
RN7SKP88	TF binding region
ENSG00000268172	Chromatin interaction
ENSG00000178104	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10752806	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10910700	0.83[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11803698	1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11805591	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs12119913	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12125446	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs12131174	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12136740	1.00[JPT][hapmap]
rs12141707	1.00[JPT][hapmap]
rs1663926	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1698598	1.00[JPT][hapmap]
rs2312022	1.00[JPT][hapmap]
rs3010973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6656237	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6666983	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6674788	1.00[JPT][hapmap]
rs6678258	0.87[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6699476	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6702249	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7548981	0.88[CEU][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
3	esv1830469	chr1:144679113-145320996	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv872212	chr1:144850451-145073750	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv1005230	chr1:144865627-145151820	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	esv1828244	chr1:144865627-145243316	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
7	esv2753760	chr1:144873327-145041016	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	esv2753260	chr1:144873327-145129144	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
9	nsv872214	chr1:144875799-145195645	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
10	nsv821620	chr1:144885908-145095806	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
11	esv2753261	chr1:144889465-145041016	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
13	nsv872216	chr1:144894697-145041251	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
14	esv1824264	chr1:144902232-145098718	Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
15	esv1828303	chr1:144902232-145098718	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
16	esv1831542	chr1:144902232-145098718	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
17	esv1843292	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
18	esv1850612	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
19	esv1819879	chr1:144902232-145287810	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
20	esv1822839	chr1:144902232-145393578	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
21	esv1826561	chr1:144902232-145393578	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
22	esv1849727	chr1:144902232-145393578	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
23	nsv870419	chr1:144912330-145113174	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
24	nsv1014405	chr1:144914802-145041053	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
25	nsv1013214	chr1:144914802-145069306	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
26	nsv821349	chr1:144916753-145090362	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
27	nsv824365	chr1:144916753-145090362	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
28	esv1818887	chr1:144919989-145074925	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
29	esv32934	chr1:144920018-145079815	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	esv3387252	chr1:144922395-145093993	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	esv1814765	chr1:144923014-145074925	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	esv1820235	chr1:144923014-145087821	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
33	esv1805522	chr1:144938320-145104261	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
34	esv1846928	chr1:144938320-145104261	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
35	esv1815206	chr1:144940095-145082961	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
36	esv1815389	chr1:144940855-145080948	Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
37	esv1846259	chr1:144941990-145083949	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
38	esv1830107	chr1:144942423-145074925	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	esv1850767	chr1:144942423-145074925	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
40	esv1826390	chr1:144943140-145085418	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
41	esv1815951	chr1:144948280-145078168	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
42	esv1845217	chr1:144948280-145078168	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
43	esv1826769	chr1:144948280-145088893	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
44	esv19656	chr1:144948283-145083994	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
45	nsv8069	chr1:144948383-145081051	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
46	nsv1005180	chr1:144948956-145041053	Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
47	nsv1007674	chr1:144948956-145069306	Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
48	nsv824376	chr1:144949067-145080191	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
49	esv1818816	chr1:144949949-145075125	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
50	esv1819156	chr1:144949949-145075125	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:145037400-145040600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:145038000-145041600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr1:145038200-145040400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
4	chr1:145038200-145040400	Flanking Active TSS	NHLF	lung
5	chr1:145038400-145040600	Flanking Active TSS	NH-A	brain
6	chr1:145038600-145040600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:145038600-145040600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:145038600-145040600	Flanking Active TSS	Liver	Liver
9	chr1:145038800-145040400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
10	chr1:145038800-145040400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
11	chr1:145038800-145040600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
13	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
16	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
17	chr1:145038800-145040600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
18	chr1:145038800-145040800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
19	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
20	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:145039000-145040400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
24	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
25	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
27	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
30	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
31	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr1:145039000-145040400	Flanking Active TSS	Ovary	ovary
33	chr1:145039000-145040400	Flanking Active TSS	Pancreas	Pancrea
34	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
35	chr1:145039000-145040400	Flanking Bivalent TSS/Enh	HepG2	liver
36	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
38	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
40	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
41	chr1:145039000-145040600	Flanking Bivalent TSS/Enh	Dnd41	blood
42	chr1:145039000-145040600	Flanking Active TSS	HMEC	breast
43	chr1:145039200-145040400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:145039200-145040400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
45	chr1:145039200-145040400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:145039200-145040400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:145039200-145040400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
48	chr1:145039200-145040400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
49	chr1:145039200-145040600	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
50	chr1:145039400-145040400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links