Variant report

Variant	rs1663926
Chromosome Location	chr1:145014832-145014833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr1:145014532-145015500	Hela-S3	cervix:	n/a	n/a
2	RAD21	chr1:145014363-145015089	ECC-1	luminal epithelium:	n/a	n/a
3	FOSL1	chr1:145014394-145015729	HCT-116	colon:	n/a	n/a
4	RCOR1	chr1:145012124-145015984	K562	blood:	n/a	n/a
5	USF2	chr1:145014728-145015691	Hela-S3	cervix:	n/a	n/a
6	RAD21	chr1:145014347-145015495	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr1:145014720-145014870	GM12869	blood:	n/a	n/a
8	SMARCB1	chr1:145012553-145018909	K562	blood:	n/a	n/a
9	BRCA1	chr1:145013715-145015486	GM12878	blood:	n/a	n/a
10	EGR1	chr1:145014510-145015758	HCT-116	colon:	n/a	n/a
11	STAT3	chr1:145014368-145015658	MCF10A-Er-Src	breast:	n/a	chr1:145014782-145014789
12	MAX	chr1:145014547-145015490	K562	blood:	n/a	n/a
13	HCFC1	chr1:145012078-145018983	K562	blood:	n/a	n/a
14	ELK1	chr1:145012850-145016594	K562	blood:	n/a	n/a
15	RAD21	chr1:145014406-145015043	SK-N-SH_RA	brain:	n/a	n/a
16	RFX5	chr1:145014270-145016211	K562	blood:	n/a	n/a
17	IRF1	chr1:145012069-145018864	K562	blood:	n/a	chr1:145012723-145012744 chr1:145013079-145013088 chr1:145014529-145014543 chr1:145012766-145012787 chr1:145018062-145018078
18	CTCF	chr1:145014443-145014845	GM12878	blood:	n/a	n/a
19	CTCF	chr1:145014313-145015035	HCT-116	colon:	n/a	n/a
20	STAT5A	chr1:145011899-145016278	K562	blood:	n/a	chr1:145013081-145013093 chr1:145014782-145014789 chr1:145013425-145013433
21	RAD21	chr1:145014374-145014965	HepG2	liver:	n/a	n/a
22	FOS	chr1:145014551-145015572	MCF10A-Er-Src	breast:	n/a	n/a
23	IRF1	chr1:145012045-145016412	K562	blood:	n/a	chr1:145012723-145012744 chr1:145013079-145013088 chr1:145014529-145014543 chr1:145012766-145012787
24	TBL1XR1	chr1:145012058-145016854	K562	blood:	n/a	n/a
25	RAD21	chr1:145014523-145014850	HepG2	liver:	n/a	n/a
26	SMC3	chr1:145014283-145015161	GM12878	blood:	n/a	n/a
27	CTCF	chr1:145014439-145014859	A549	lung:	n/a	n/a
28	SMC3	chr1:145013318-145015425	K562	blood:	n/a	n/a
29	BACH1	chr1:145012286-145016138	K562	blood:	n/a	n/a
30	POLR2A	chr1:145013965-145017073	U87	brain:	n/a	n/a
31	ZNF384	chr1:145014234-145016515	GM12878	blood:	n/a	n/a
32	MAX	chr1:145014550-145015487	K562	blood:	n/a	n/a
33	KAP1	chr1:145014829-145016374	K562	blood:	n/a	n/a
34	ZNF143	chr1:145012222-145017756	K562	blood:	n/a	chr1:145015676-145015694
35	EP300	chr1:145012071-145015918	K562	blood:	n/a	chr1:145012192-145012208 chr1:145014530-145014544
36	POLR2A	chr1:145014154-145016307	U87	brain:	n/a	n/a
37	CEBPB	chr1:145014562-145015842	HCT-116	colon:	n/a	chr1:145015295-145015306
38	ZNF143	chr1:145014151-145015818	Hela-S3	cervix:	n/a	chr1:145015676-145015694
39	CEBPB	chr1:145014071-145015632	K562	blood:	n/a	chr1:145015295-145015306
40	CTCF	chr1:145014403-145015308	IMR90	lung:	n/a	n/a
41	CTCF	chr1:145013863-145015425	MCF-7	breast:	n/a	n/a
42	CHD2	chr1:145014733-145015496	HepG2	liver:	n/a	n/a
43	CUX1	chr1:145012016-145018904	K562	blood:	n/a	chr1:145014835-145014846
44	RAD21	chr1:145014322-145015611	HCT-116	colon:	n/a	n/a
45	SP1	chr1:145014537-145016036	HCT-116	colon:	n/a	chr1:145015676-145015686 chr1:145015676-145015686
46	FOXP2	chr1:145014459-145014967	SK-N-MC	brain:	n/a	n/a
47	CTCF	chr1:145014360-145015177	MCF-7	breast:	n/a	n/a
48	RAD21	chr1:145014222-145015094	MCF-7	breast:	n/a	n/a
49	ARID3A	chr1:145014466-145014972	HepG2	liver:	n/a	n/a
50	ZNF274	chr1:145014719-145015212	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:145011807..145014868-chr1:145061675..145064921,5	K562	blood:
2	chr1:145013488..145015671-chr1:145056479..145059269,3	MCF-7	breast:
3	chr1:145003631..145004191-chr1:145014605..145015136,2	K562	blood:
4	chr1:145013743..145015162-chr1:145058558..145059809,20	MCF-7	breast:
5	chr1:145013724..145015799-chr5:131825406..131827078,2	MCF-7	breast:
6	chr1:145014334..145015129-chr1:145055872..145056456,2	MCF-7	breast:
7	chr1:145013098..145015242-chr1:145381594..145384249,2	MCF-7	breast:
8	chr1:144532329..144536270-chr1:145012343..145016063,6	K562	blood:
9	chr1:145013143..145015357-chr1:145059234..145060924,2	K562	blood:
10	chr1:145013051..145015770-chr1:145381611..145384530,4	K562	blood:
11	chr1:144931078..144932841-chr1:145013046..145015215,2	MCF-7	breast:
12	chr1:145012679..145016226-chr1:145380619..145383924,3	K562	blood:
13	chr1:121484512..121485424-chr1:145014402..145015111,3	MCF-7	breast:
14	chr1:145014181..145015125-chr1:146745480..146746072,2	K562	blood:
15	chr1:144532329..144535680-chr1:145012343..145016063,5	K562	blood:
16	chr1:145012523..145015160-chr1:145055357..145057301,2	K562	blood:
17	chr1:145013891..145015151-chr1:145058685..145059554,6	K562	blood:
18	chr1:145014159..145015000-chr1:145060710..145062762,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272755	TF binding region
ENSG00000201558	Chromatin interaction
ENSG00000178104	Chromatin interaction
ENSG00000125347	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000233396	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10752806	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10910700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10910713	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11803698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11805591	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12119913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12125446	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131174	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12141707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1663908	0.94[CEU][hapmap]
rs1698598	1.00[JPT][hapmap]
rs1778700	0.94[CEU][hapmap]
rs2312022	1.00[JPT][hapmap]
rs3010973	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs3099174	0.81[CEU][hapmap]
rs6656237	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6666983	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6674788	1.00[JPT][hapmap]
rs6678258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6699476	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6702249	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7548981	0.94[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:109 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
3	esv1830469	chr1:144679113-145320996	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv872212	chr1:144850451-145073750	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv872213	chr1:144865454-145033984	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1005230	chr1:144865627-145151820	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	esv1828244	chr1:144865627-145243316	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
8	esv2753760	chr1:144873327-145041016	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	esv2753260	chr1:144873327-145129144	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
10	nsv872214	chr1:144875799-145195645	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
11	nsv821620	chr1:144885908-145095806	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	esv2753261	chr1:144889465-145041016	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
13	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
14	nsv872216	chr1:144894697-145041251	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
15	esv1824264	chr1:144902232-145098718	Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
16	esv1828303	chr1:144902232-145098718	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
17	esv1831542	chr1:144902232-145098718	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
18	esv1843292	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
19	esv1850612	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
20	esv1819879	chr1:144902232-145287810	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
21	esv1822839	chr1:144902232-145393578	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
22	esv1826561	chr1:144902232-145393578	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
23	esv1849727	chr1:144902232-145393578	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
24	nsv870419	chr1:144912330-145113174	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
25	nsv1014405	chr1:144914802-145041053	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
26	nsv1013214	chr1:144914802-145069306	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
27	nsv821349	chr1:144916753-145090362	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
28	nsv824365	chr1:144916753-145090362	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
29	esv1818887	chr1:144919989-145074925	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	esv32934	chr1:144920018-145079815	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
31	esv3387252	chr1:144922395-145093993	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
32	esv1814765	chr1:144923014-145074925	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
33	esv1820235	chr1:144923014-145087821	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
34	esv1805522	chr1:144938320-145104261	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
35	esv1846928	chr1:144938320-145104261	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
36	esv1815206	chr1:144940095-145082961	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
37	esv1815389	chr1:144940855-145080948	Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
38	esv1846259	chr1:144941990-145083949	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
39	esv1830107	chr1:144942423-145074925	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
40	esv1850767	chr1:144942423-145074925	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
41	esv1826390	chr1:144943140-145085418	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
42	esv2762189	chr1:144945737-145014990	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
43	esv1815951	chr1:144948280-145078168	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
44	esv1845217	chr1:144948280-145078168	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
45	esv1826769	chr1:144948280-145088893	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
46	esv19656	chr1:144948283-145083994	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
47	nsv8069	chr1:144948383-145081051	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
48	nsv1005180	chr1:144948956-145041053	Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
49	nsv1007674	chr1:144948956-145069306	Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
50	nsv824376	chr1:144949067-145080191	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:145000800-145021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:145002800-145024200	Weak transcription	Gastric	stomach
3	chr1:145004600-145016200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:145006600-145016400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:145008200-145016800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:145010600-145023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:145011600-145016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:145012000-145016600	Genic enhancers	Brain Germinal Matrix	brain
9	chr1:145012200-145016800	Strong transcription	Liver	Liver
10	chr1:145012400-145016400	Weak transcription	Lung	lung
11	chr1:145013000-145016600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:145013200-145016000	Genic enhancers	Fetal Brain Male	brain
13	chr1:145013800-145015200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:145013800-145015600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:145014000-145015200	Enhancers	Fetal Brain Female	brain
16	chr1:145014000-145015600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:145014000-145016800	Genic enhancers	Fetal Muscle Leg	muscle
18	chr1:145014000-145018000	Enhancers	Psoas Muscle	Psoas
19	chr1:145014200-145015000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:145014200-145015000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:145014200-145015200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:145014200-145015800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:145014200-145015800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:145014200-145015800	Enhancers	Fetal Stomach	stomach
25	chr1:145014200-145016200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr1:145014200-145017600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:145014400-145015200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:145014400-145015200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr1:145014400-145015400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:145014400-145017200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:145014600-145015200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:145014600-145015200	Enhancers	Primary B cells from peripheral blood	blood
33	chr1:145014600-145015400	Enhancers	Primary hematopoietic stem cells	blood
34	chr1:145014600-145015400	Enhancers	NH-A	brain
35	chr1:145014600-145015600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:145014600-145015800	Enhancers	HMEC	breast
37	chr1:145014600-145016000	Enhancers	NHEK	skin
38	chr1:145014600-145016400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
39	chr1:145014800-145015000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr1:145014800-145015000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:145014800-145015000	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr1:145014800-145015000	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr1:145014800-145015000	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr1:145014800-145015000	Bivalent Enhancer	HepG2	liver
45	chr1:145014800-145015200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr1:145014800-145015200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr1:145014800-145015200	Enhancers	Primary T cells from cord blood	blood
48	chr1:145014800-145015200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr1:145014800-145015200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:145014800-145015200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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