Variant report

Variant	rs10918277
Chromosome Location	chr1:165727134-165727135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165726972..165729687-chr1:165736791..165740987,3	MCF-7	breast:
2	chr1:165724083..165728644-chr1:165795970..165799220,7	K562	blood:
3	chr1:165719684..165722558-chr1:165723344..165727845,5	K562	blood:
4	chr1:165725229..165727213-chr1:165796804..165799182,3	MCF-7	breast:
5	chr1:165720854..165729861-chr1:165736355..165740477,8	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10918257	1.00[AMR][1000 genomes]
rs10918269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918273	1.00[AMR][1000 genomes]
rs10918275	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12059327	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12060158	1.00[AMR][1000 genomes]
rs12063717	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs12071265	1.00[AMR][1000 genomes]
rs12077653	1.00[AMR][1000 genomes]
rs12084371	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12092685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094264	1.00[AMR][1000 genomes]
rs12096363	1.00[AMR][1000 genomes]
rs12097756	1.00[AMR][1000 genomes]
rs16849835	1.00[AMR][1000 genomes]
rs16850119	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs16850284	1.00[YRI][hapmap]
rs41510944	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs60361398	1.00[AMR][1000 genomes]
rs6683657	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6703094	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016649	1.00[AMR][1000 genomes]
rs73016655	1.00[AMR][1000 genomes]
rs73016661	1.00[AMR][1000 genomes]
rs73016667	1.00[AMR][1000 genomes]
rs73018505	1.00[AMR][1000 genomes]
rs7522083	1.00[AMR][1000 genomes]
rs7525496	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv518886	chr1:165714187-165741646	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165687600-165737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165694600-165736800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:165711200-165736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:165712200-165737000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:165712400-165727200	Weak transcription	HMEC	breast
6	chr1:165712600-165737000	Weak transcription	Colonic Mucosa	Colon
7	chr1:165713400-165733600	Weak transcription	NHEK	skin
8	chr1:165713600-165737000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:165716800-165728000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:165717400-165728000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:165720800-165733400	Weak transcription	A549	lung
12	chr1:165721800-165727200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:165721800-165727200	Weak transcription	Right Ventricle	heart
14	chr1:165721800-165728800	Weak transcription	Brain Substantia Nigra	brain
15	chr1:165721800-165728800	Strong transcription	Fetal Intestine Large	intestine
16	chr1:165721800-165729200	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr1:165721800-165730800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:165721800-165731000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:165721800-165731200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:165721800-165732600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:165721800-165732600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:165721800-165732600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:165721800-165732800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:165721800-165732800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:165721800-165734800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:165721800-165734800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:165721800-165734800	Weak transcription	Esophagus	oesophagus
28	chr1:165721800-165735200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:165721800-165736600	Weak transcription	Stomach Mucosa	stomach
30	chr1:165721800-165737000	Weak transcription	Fetal Brain Male	brain
31	chr1:165721800-165737000	Weak transcription	Fetal Heart	heart
32	chr1:165721800-165737000	Weak transcription	Right Atrium	heart
33	chr1:165721800-165737200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:165721800-165737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:165722000-165727800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:165722400-165732800	Weak transcription	HepG2	liver
37	chr1:165722400-165735000	Weak transcription	HSMMtube	muscle
38	chr1:165722600-165727200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr1:165722600-165733400	Weak transcription	Brain Anterior Caudate	brain
40	chr1:165722600-165733600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:165722600-165736800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:165722800-165729200	Strong transcription	Fetal Kidney	kidney
43	chr1:165722800-165734800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:165723000-165727400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:165723000-165729400	Weak transcription	Thymus	Thymus
46	chr1:165723000-165730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:165723000-165730400	Weak transcription	Gastric	stomach
48	chr1:165723000-165730600	Weak transcription	Lung	lung
49	chr1:165723000-165736800	Weak transcription	Spleen	Spleen
50	chr1:165723200-165732800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links