Variant report
| Variant | rs12094264 |
|---|---|
| Chromosome Location | chr1:165754649-165754650 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:165736907..165739814-chr1:165752106..165756074,3 | MCF-7 | breast: | |
| 2 | chr1:165754427..165757413-chr1:165869408..165871791,2 | MCF-7 | breast: | |
| 3 | chr1:165738057..165739957-chr1:165754285..165756063,3 | K562 | blood: | |
| 4 | chr1:165753594..165756222-chr1:165796180..165798248,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-UCK2-1 | chr1:165753875-165754825 | NONHSAT007336 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224358 | Chromatin interaction |
| ENSG00000236364 | Chromatin interaction |
| ENSG00000143183 | Chromatin interaction |
| ENSG00000143179 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10918257 | 1.00[AMR][1000 genomes] |
| rs10918269 | 1.00[AMR][1000 genomes] |
| rs10918273 | 1.00[AMR][1000 genomes] |
| rs10918275 | 1.00[AMR][1000 genomes] |
| rs10918277 | 1.00[AMR][1000 genomes] |
| rs12059327 | 1.00[AMR][1000 genomes] |
| rs12060158 | 1.00[AMR][1000 genomes] |
| rs12063717 | 1.00[AMR][1000 genomes] |
| rs12071265 | 1.00[AMR][1000 genomes] |
| rs12077653 | 1.00[AMR][1000 genomes] |
| rs12084371 | 1.00[AMR][1000 genomes] |
| rs12092685 | 1.00[AMR][1000 genomes] |
| rs12096363 | 1.00[AMR][1000 genomes] |
| rs12097756 | 1.00[AMR][1000 genomes] |
| rs16849835 | 1.00[AMR][1000 genomes] |
| rs16850119 | 1.00[AMR][1000 genomes] |
| rs41510944 | 1.00[AMR][1000 genomes] |
| rs60361398 | 1.00[AMR][1000 genomes] |
| rs6683657 | 1.00[AMR][1000 genomes] |
| rs6703094 | 1.00[AMR][1000 genomes] |
| rs73016649 | 1.00[AMR][1000 genomes] |
| rs73016655 | 1.00[AMR][1000 genomes] |
| rs73016661 | 1.00[AMR][1000 genomes] |
| rs73016667 | 1.00[AMR][1000 genomes] |
| rs73018505 | 1.00[AMR][1000 genomes] |
| rs7522083 | 1.00[AMR][1000 genomes] |
| rs7525496 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756102 | chr1:165652342-165877342 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011720 | chr1:165669589-165802516 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165743200-165756600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr1:165753200-165755200 | Enhancers | HepG2 | liver |
