Variant report

Variant	rs12092685
Chromosome Location	chr1:165746146-165746147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10918257	1.00[AMR][1000 genomes]
rs10918269	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918273	1.00[AMR][1000 genomes]
rs10918275	1.00[AMR][1000 genomes]
rs10918277	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059327	1.00[AMR][1000 genomes]
rs12060158	1.00[AMR][1000 genomes]
rs12063717	1.00[AMR][1000 genomes]
rs12071265	1.00[AMR][1000 genomes]
rs12077653	1.00[AMR][1000 genomes]
rs12084371	1.00[AMR][1000 genomes]
rs12094264	1.00[AMR][1000 genomes]
rs12096363	1.00[AMR][1000 genomes]
rs12097756	1.00[AMR][1000 genomes]
rs16849835	1.00[AMR][1000 genomes]
rs16850119	1.00[AMR][1000 genomes]
rs16850284	0.96[AFR][1000 genomes]
rs41510944	1.00[AMR][1000 genomes]
rs60361398	1.00[AMR][1000 genomes]
rs6683657	1.00[AMR][1000 genomes]
rs6703094	1.00[AMR][1000 genomes]
rs73016649	1.00[AMR][1000 genomes]
rs73016655	1.00[AMR][1000 genomes]
rs73016661	1.00[AMR][1000 genomes]
rs73016667	1.00[AMR][1000 genomes]
rs73018505	1.00[AMR][1000 genomes]
rs7522083	1.00[AMR][1000 genomes]
rs7525496	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165740000-165747800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:165742800-165752000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:165743200-165753200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:165743200-165756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:165743400-165747000	Weak transcription	Brain Substantia Nigra	brain
6	chr1:165743400-165748000	Weak transcription	Adipose Nuclei	Adipose
7	chr1:165744400-165746400	Weak transcription	Osteobl	bone
8	chr1:165744600-165746200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:165744600-165746400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:165745000-165746600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:165745200-165747000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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