The 2.0 version of rSNPBase

Variant report

Variant rs10929617
Chromosome Location chr2:10021459-10021460
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:9987200-10038400 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr2:9993800-10079600 Weak transcription Gastric stomach
3 chr2:9995800-10038000 Weak transcription Small Intestine intestine
4 chr2:9998200-10024000 Weak transcription Rectal Smooth Muscle rectum
5 chr2:9998200-10035600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr2:9998600-10024000 Weak transcription Pancreas Pancrea
7 chr2:9998800-10026000 Weak transcription Fetal Brain Male brain
8 chr2:9998800-10032200 Weak transcription Fetal Heart heart
9 chr2:9998800-10036400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr2:9999000-10024000 Weak transcription Colonic Mucosa Colon
11 chr2:9999000-10024000 Weak transcription Spleen Spleen
12 chr2:9999000-10035800 Weak transcription Brain Hippocampus Middle brain
13 chr2:9999000-10035800 Weak transcription Brain Substantia Nigra brain
14 chr2:9999000-10037000 Weak transcription Brain Cingulate Gyrus brain
15 chr2:9999000-10037200 Weak transcription Colon Smooth Muscle Colon
16 chr2:9999200-10036200 Weak transcription Brain Angular Gyrus brain
17 chr2:9999200-10036400 Weak transcription Placenta Amnion Placenta Amnion
18 chr2:9999200-10053800 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr2:10001600-10024000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:10001600-10024000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr2:10002200-10024200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:10007800-10026200 Strong transcription Dnd41 blood
23 chr2:10008000-10026800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr2:10008200-10028000 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr2:10008400-10026600 Weak transcription GM12878-XiMat blood
26 chr2:10009000-10024000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr2:10011600-10022200 Strong transcription Fetal Thymus thymus
28 chr2:10014600-10024000 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr2:10014800-10045400 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr2:10015000-10036200 Weak transcription Fetal Kidney kidney
31 chr2:10015200-10024000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr2:10015800-10024000 Weak transcription Aorta Aorta
33 chr2:10016800-10024000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr2:10017600-10024800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr2:10017600-10036200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr2:10017800-10024000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr2:10017800-10073000 Weak transcription Right Ventricle heart
38 chr2:10018000-10023600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr2:10018000-10026400 Strong transcription HUES6 Cell Line embryonic stem cell
40 chr2:10018200-10023400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr2:10018200-10024400 Weak transcription ES-WA7 Cell Line embryonic stem cell
42 chr2:10018400-10035600 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr2:10018600-10024800 Strong transcription Placenta Placenta
44 chr2:10018800-10023600 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr2:10018800-10024000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr2:10018800-10024000 Weak transcription Psoas Muscle Psoas
47 chr2:10018800-10027600 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr2:10018800-10036200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr2:10019000-10036000 Weak transcription Stomach Mucosa stomach
50 chr2:10019200-10022600 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015