Variant report

Variant	rs10947610
Chromosome Location	chr6:11869716-11869717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11864063..11866982-chr6:11867941..11870630,2	K562	blood:
2	chr6:11868745..11870307-chr6:11874002..11876924,2	K562	blood:
3	chr6:11867657..11870618-chr6:11870825..11872427,2	K562	blood:
4	chr6:11867335..11870900-chr6:11873220..11876785,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947602	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755122	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1883854	0.85[ASN][1000 genomes]
rs1883855	0.86[ASN][1000 genomes]
rs1883857	0.80[ASN][1000 genomes]
rs2002736	0.81[AMR][1000 genomes]
rs4520010	0.84[ASN][1000 genomes]
rs4521583	0.86[ASN][1000 genomes]
rs4526189	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6457919	0.86[ASN][1000 genomes]
rs6921169	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7450581	0.86[ASN][1000 genomes]
rs7745004	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7765341	0.84[ASN][1000 genomes]
rs7767287	0.85[ASN][1000 genomes]
rs7769049	0.83[ASN][1000 genomes]
rs932441	0.85[ASN][1000 genomes]
rs9357210	0.85[ASN][1000 genomes]
rs9470271	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11866400-11870000	Weak transcription	Osteobl	bone
2	chr6:11866600-11869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:11866600-11869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:11866600-11870000	Weak transcription	NHDF-Ad	bronchial
5	chr6:11868400-11870200	Enhancers	Fetal Heart	heart
6	chr6:11868600-11871200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:11868600-11871200	Enhancers	Fetal Stomach	stomach
8	chr6:11868600-11871400	Enhancers	Fetal Lung	lung
9	chr6:11868600-11871400	Enhancers	Ovary	ovary
10	chr6:11868800-11870000	Weak transcription	Lung	lung
11	chr6:11868800-11870400	Weak transcription	Pancreas	Pancrea
12	chr6:11868800-11870400	Weak transcription	Spleen	Spleen
13	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:11869200-11870600	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:11869200-11871000	Enhancers	NHLF	lung
16	chr6:11869400-11870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:11869400-11870000	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:11869400-11870400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:11869400-11870400	Weak transcription	Left Ventricle	heart
20	chr6:11869400-11871200	Enhancers	Liver	Liver
21	chr6:11869400-11871200	Enhancers	Hela-S3	cervix
22	chr6:11869600-11869800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:11869600-11870200	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:11869600-11870800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:11869600-11870800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:11869600-11871000	Enhancers	Fetal Muscle Leg	muscle

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