Variant report

Variant	rs4526189
Chromosome Location	chr6:11869945-11869946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11864063..11866982-chr6:11867941..11870630,2	K562	blood:
2	chr6:11868745..11870307-chr6:11874002..11876924,2	K562	blood:
3	chr6:11867657..11870618-chr6:11870825..11872427,2	K562	blood:
4	chr6:11867335..11870900-chr6:11873220..11876785,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947602	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10947610	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11755122	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2002735	0.82[ASN][1000 genomes]
rs2002736	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2015055	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6921169	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7745004	0.91[CEU][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9394332	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs9462160	0.86[CHB][hapmap]
rs9470271	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4526189	C6orf105	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11866400-11870000	Weak transcription	Osteobl	bone
2	chr6:11866600-11870000	Weak transcription	NHDF-Ad	bronchial
3	chr6:11868400-11870200	Enhancers	Fetal Heart	heart
4	chr6:11868600-11871200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:11868600-11871200	Enhancers	Fetal Stomach	stomach
6	chr6:11868600-11871400	Enhancers	Fetal Lung	lung
7	chr6:11868600-11871400	Enhancers	Ovary	ovary
8	chr6:11868800-11870000	Weak transcription	Lung	lung
9	chr6:11868800-11870400	Weak transcription	Pancreas	Pancrea
10	chr6:11868800-11870400	Weak transcription	Spleen	Spleen
11	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:11869200-11870600	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:11869200-11871000	Enhancers	NHLF	lung
14	chr6:11869400-11870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:11869400-11870000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:11869400-11870400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:11869400-11870400	Weak transcription	Left Ventricle	heart
18	chr6:11869400-11871200	Enhancers	Liver	Liver
19	chr6:11869400-11871200	Enhancers	Hela-S3	cervix
20	chr6:11869600-11870200	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:11869600-11870800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:11869600-11870800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr6:11869600-11871000	Enhancers	Fetal Muscle Leg	muscle
24	chr6:11869800-11870400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:11869800-11870600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:11869800-11870800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:11869800-11870800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:11869800-11870800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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