Variant report

Variant	rs2002736
Chromosome Location	chr6:11865238-11865239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10947602	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10947610	0.81[AMR][1000 genomes]
rs11755122	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2015055	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2103738	0.87[ASN][1000 genomes]
rs4526189	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4713966	0.80[AMR][1000 genomes]
rs4713979	0.89[ASN][1000 genomes]
rs6918454	0.84[ASN][1000 genomes]
rs6921169	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7745004	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9357211	0.84[ASN][1000 genomes]
rs9366903	0.84[ASN][1000 genomes]
rs9394343	0.84[ASN][1000 genomes]
rs9470271	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11859800-11867000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11863200-11868600	Weak transcription	Fetal Stomach	stomach
4	chr6:11864800-11865600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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