Variant report

Variant	rs9357211
Chromosome Location	chr6:11859161-11859162
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11854715..11856234-chr6:11857664..11859320,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1883854	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1883855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1883857	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2002735	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2002736	0.84[ASN][1000 genomes]
rs2103738	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327487	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs33999529	0.92[ASN][1000 genomes]
rs4412196	0.92[ASN][1000 genomes]
rs4520010	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4521583	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713979	0.95[ASN][1000 genomes]
rs60411394	0.83[ASN][1000 genomes]
rs6457919	0.95[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6918179	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6918454	0.95[ASN][1000 genomes]
rs6919715	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930934	0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6931106	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7450581	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7765341	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7767287	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7769049	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs932441	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9348991	0.92[ASN][1000 genomes]
rs9357210	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9366903	1.00[ASN][1000 genomes]
rs9368906	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9368918	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380549	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9380574	0.82[ASN][1000 genomes]
rs9394332	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9394343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11858600-11863000	Strong transcription	Liver	Liver

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