Variant report

Variant	rs2103738
Chromosome Location	chr6:11865521-11865522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11864395..11867152-chr6:11883777..11885671,2	K562	blood:
2	chr6:11864063..11866982-chr6:11867941..11870630,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1883854	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1883855	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1883857	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2002735	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2002736	0.87[ASN][1000 genomes]
rs2327487	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs33999529	0.90[ASN][1000 genomes]
rs4412196	0.90[ASN][1000 genomes]
rs4520010	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4521583	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713979	0.97[ASN][1000 genomes]
rs60411394	0.80[ASN][1000 genomes]
rs6457919	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6918179	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6918454	0.97[ASN][1000 genomes]
rs6919715	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930934	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6931106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7450581	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7745004	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs7765341	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7767287	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7769049	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs932441	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9348991	0.90[ASN][1000 genomes]
rs9357210	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9357211	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366903	0.97[ASN][1000 genomes]
rs9368906	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs9368918	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380549	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs9380574	0.84[ASN][1000 genomes]
rs9394332	0.94[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9394343	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2103738	TFAP2A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11859800-11867000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11863200-11868600	Weak transcription	Fetal Stomach	stomach
4	chr6:11864800-11865600	Weak transcription	Liver	Liver

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