Variant report

Variant	rs9380549
Chromosome Location	chr6:11835787-11835788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2103738	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2327487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33999529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412196	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713979	0.87[ASN][1000 genomes]
rs60411394	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918179	1.00[ASN][1000 genomes]
rs6918454	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919715	1.00[ASN][1000 genomes]
rs6930934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9348991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357211	0.92[ASN][1000 genomes]
rs9366903	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368918	0.99[ASN][1000 genomes]
rs9380574	0.84[EUR][1000 genomes]
rs9394343	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9380549	JARID2	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11833800-11835800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:11833800-11835800	Enhancers	Liver	Liver
3	chr6:11833800-11836000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:11834000-11836000	Enhancers	Fetal Heart	heart
5	chr6:11834200-11836400	Enhancers	Fetal Lung	lung
6	chr6:11834400-11835800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:11835200-11835800	Enhancers	Pancreas	Pancrea
8	chr6:11835200-11836400	Enhancers	K562	blood
9	chr6:11835400-11835800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:11835400-11835800	Enhancers	Adipose Nuclei	Adipose
11	chr6:11835400-11835800	Enhancers	Esophagus	oesophagus
12	chr6:11835400-11835800	Enhancers	Right Ventricle	heart
13	chr6:11835600-11836200	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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