Variant report

Variant	rs2327487
Chromosome Location	chr6:11835155-11835156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2103738	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs33999529	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4412196	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713979	0.82[ASN][1000 genomes]
rs60411394	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6918179	0.94[ASN][1000 genomes]
rs6918454	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919715	0.94[ASN][1000 genomes]
rs6930934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6931106	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9348991	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357211	0.86[ASN][1000 genomes]
rs9366903	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368918	0.92[ASN][1000 genomes]
rs9380549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380574	0.83[EUR][1000 genomes]
rs9394332	0.82[JPT][hapmap]
rs9394343	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11831000-11835400	Weak transcription	Left Ventricle	heart
2	chr6:11833800-11835200	Flanking Active TSS	K562	blood
3	chr6:11833800-11835600	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:11833800-11835800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:11833800-11835800	Enhancers	Liver	Liver
6	chr6:11833800-11836000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:11834000-11836000	Enhancers	Fetal Heart	heart
8	chr6:11834200-11835200	Weak transcription	Pancreas	Pancrea
9	chr6:11834200-11835400	Weak transcription	Esophagus	oesophagus
10	chr6:11834200-11835400	Weak transcription	Gastric	stomach
11	chr6:11834200-11836400	Enhancers	Fetal Lung	lung
12	chr6:11834400-11835800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:11835000-11835200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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