Variant report

Variant	rs6919715
Chromosome Location	chr6:11850749-11850750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1883854	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1883855	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1883857	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2002735	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2103738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2327487	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs33999529	1.00[ASN][1000 genomes]
rs4412196	1.00[ASN][1000 genomes]
rs4520010	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4521583	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713979	0.87[ASN][1000 genomes]
rs60411394	0.91[ASN][1000 genomes]
rs6457919	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6918179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918454	0.92[ASN][1000 genomes]
rs6930934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6931106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7450581	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7765341	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7767287	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7769049	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs932441	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9348991	1.00[ASN][1000 genomes]
rs9357210	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9357211	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9366903	0.92[ASN][1000 genomes]
rs9368906	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9368918	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9394332	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9394343	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:11847000-11851600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:11847200-11851400	Weak transcription	NHEK	skin
6	chr6:11847200-11854600	Weak transcription	Gastric	stomach
7	chr6:11847600-11851400	ZNF genes & repeats	GM12878-XiMat	blood
8	chr6:11848400-11851600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:11849000-11853800	Weak transcription	Stomach Mucosa	stomach
10	chr6:11849000-11854000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:11849800-11851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11849800-11851200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:11849800-11851200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:11850000-11851000	Weak transcription	HSMM	muscle
16	chr6:11850000-11851200	Weak transcription	HMEC	breast
17	chr6:11850000-11851600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:11850000-11851800	Weak transcription	Osteobl	bone
19	chr6:11850000-11852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
21	chr6:11850200-11851000	Weak transcription	Hela-S3	cervix
22	chr6:11850200-11851200	Weak transcription	HSMMtube	muscle
23	chr6:11850200-11852000	Weak transcription	NH-A	brain
24	chr6:11850200-11852600	Weak transcription	Liver	Liver
25	chr6:11850200-11852600	Weak transcription	Fetal Lung	lung
26	chr6:11850400-11850800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:11850400-11851600	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
29	chr6:11850600-11851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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