Variant report

Variant	rs6931106
Chromosome Location	chr6:11848580-11848581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11834799..11837724-chr6:11847345..11849609,2	K562	blood:
2	chr6:11844746..11849186-chr6:12011499..12014000,4	MCF-7	breast:
3	chr6:11834747..11836299-chr6:11847370..11849609,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1883854	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1883855	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1883857	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2002735	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2103738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2327487	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs33999529	0.99[ASN][1000 genomes]
rs4412196	0.99[ASN][1000 genomes]
rs4520010	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4521583	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713979	0.86[ASN][1000 genomes]
rs60411394	0.89[ASN][1000 genomes]
rs6457919	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6918179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6918454	0.91[ASN][1000 genomes]
rs6919715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7450581	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7765341	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7767287	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7769049	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs932441	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9348991	0.99[ASN][1000 genomes]
rs9357210	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9357211	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366903	0.91[ASN][1000 genomes]
rs9368906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9368918	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9394332	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9394343	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11849200	Weak transcription	Liver	Liver
3	chr6:11847000-11851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:11847000-11851600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:11847200-11849400	Weak transcription	HMEC	breast
7	chr6:11847200-11849600	Weak transcription	Pancreas	Pancrea
8	chr6:11847200-11851400	Weak transcription	NHEK	skin
9	chr6:11847200-11854600	Weak transcription	Gastric	stomach
10	chr6:11847600-11851400	ZNF genes & repeats	GM12878-XiMat	blood
11	chr6:11847800-11850000	Enhancers	Fetal Heart	heart
12	chr6:11848000-11848600	Enhancers	Fetal Stomach	stomach
13	chr6:11848000-11850400	Enhancers	Fetal Muscle Leg	muscle
14	chr6:11848200-11850200	Enhancers	Fetal Lung	lung
15	chr6:11848400-11848800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:11848400-11849000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:11848400-11849000	Active TSS	Stomach Mucosa	stomach
18	chr6:11848400-11849600	Weak transcription	HSMMtube	muscle
19	chr6:11848400-11850200	Enhancers	NH-A	brain
20	chr6:11848400-11851600	Weak transcription	Placenta Amnion	Placenta Amnion

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