Variant report

Variant	rs60411394
Chromosome Location	chr6:11837746-11837747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2103738	0.80[ASN][1000 genomes]
rs2327487	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33999529	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4412196	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918179	0.91[ASN][1000 genomes]
rs6918454	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6919715	0.91[ASN][1000 genomes]
rs6930934	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6931106	0.89[ASN][1000 genomes]
rs9348991	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357211	0.83[ASN][1000 genomes]
rs9366903	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368906	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368918	0.89[ASN][1000 genomes]
rs9380549	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380574	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394343	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11835800-11838200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:11836200-11837800	ZNF genes & repeats	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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