Variant report

Variant	rs6918179
Chromosome Location	chr6:11852395-11852396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:
2	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:
3	chr6:11851522..11853386-chr6:11855084..11856597,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1883854	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1883855	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1883857	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2002735	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2103738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2327487	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs33999529	1.00[ASN][1000 genomes]
rs4412196	1.00[ASN][1000 genomes]
rs4520010	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4521583	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713979	0.87[ASN][1000 genomes]
rs60411394	0.91[ASN][1000 genomes]
rs6457919	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6918454	0.92[ASN][1000 genomes]
rs6919715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6931106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7450581	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7765341	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7767287	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7769049	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs932441	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9348991	1.00[ASN][1000 genomes]
rs9357210	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9357211	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9366903	0.92[ASN][1000 genomes]
rs9368906	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9368918	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9394332	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9394343	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:11847200-11854600	Weak transcription	Gastric	stomach
4	chr6:11849000-11853800	Weak transcription	Stomach Mucosa	stomach
5	chr6:11849000-11854000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:11850000-11852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
9	chr6:11850200-11852600	Weak transcription	Liver	Liver
10	chr6:11850200-11852600	Weak transcription	Fetal Lung	lung
11	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
12	chr6:11851000-11852400	Enhancers	Hela-S3	cervix
13	chr6:11851000-11852400	Enhancers	NHDF-Ad	bronchial
14	chr6:11851000-11852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:11851000-11853000	Enhancers	HSMM	muscle
16	chr6:11851200-11852600	Enhancers	HMEC	breast
17	chr6:11851600-11852400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:11851600-11852400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:11851800-11852400	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:11851800-11852400	Enhancers	Osteobl	bone
21	chr6:11851800-11852800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:11851800-11852800	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:11851800-11854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:11852000-11852400	Flanking Active TSS	HSMMtube	muscle
25	chr6:11852000-11852400	Flanking Active TSS	NH-A	brain
26	chr6:11852000-11852600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr6:11852000-11852600	Active TSS	Psoas Muscle	Psoas
28	chr6:11852000-11852600	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:11852000-11852800	Weak transcription	Fetal Kidney	kidney
30	chr6:11852000-11853000	Active TSS	Brain Hippocampus Middle	brain
31	chr6:11852000-11853200	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr6:11852000-11854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:11852000-11854600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:11852000-11854600	Weak transcription	NHEK	skin
35	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11852200-11853200	Active TSS	Brain Anterior Caudate	brain
37	chr6:11852200-11854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:11852200-11854000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:11852200-11854400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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