Variant report

Variant	rs4713979
Chromosome Location	chr6:11868682-11868683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2002736	0.89[ASN][1000 genomes]
rs2103738	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2327487	1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs33999529	0.87[ASN][1000 genomes]
rs4412196	0.87[ASN][1000 genomes]
rs6918179	0.87[ASN][1000 genomes]
rs6918454	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6919715	0.87[ASN][1000 genomes]
rs6930934	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs6931106	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs9348991	0.87[ASN][1000 genomes]
rs9357211	0.95[ASN][1000 genomes]
rs9366903	0.95[ASN][1000 genomes]
rs9368906	1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs9368918	0.86[ASN][1000 genomes]
rs9380549	1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs9380574	0.82[ASN][1000 genomes]
rs9394343	0.95[ASN][1000 genomes]
rs9462160	0.90[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4713979	ELOVL2	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11866400-11870000	Weak transcription	Osteobl	bone
2	chr6:11866600-11869000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11866600-11869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11866600-11869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:11866600-11869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:11866600-11870000	Weak transcription	NHDF-Ad	bronchial
7	chr6:11868200-11869400	Enhancers	Fetal Intestine Large	intestine
8	chr6:11868400-11868800	Flanking Active TSS	Liver	Liver
9	chr6:11868400-11869400	Enhancers	Fetal Intestine Small	intestine
10	chr6:11868400-11870200	Enhancers	Fetal Heart	heart
11	chr6:11868600-11868800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:11868600-11868800	Enhancers	Left Ventricle	heart
13	chr6:11868600-11868800	Enhancers	Lung	lung
14	chr6:11868600-11868800	Enhancers	Pancreas	Pancrea
15	chr6:11868600-11868800	Enhancers	Spleen	Spleen
16	chr6:11868600-11871200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:11868600-11871200	Enhancers	Fetal Stomach	stomach
18	chr6:11868600-11871400	Enhancers	Fetal Lung	lung
19	chr6:11868600-11871400	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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