Variant report

Variant	rs9394332
Chromosome Location	chr6:11835174-11835175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11834799..11837724-chr6:11847345..11849609,2	K562	blood:
2	chr6:11778590..11780846-chr6:11834155..11835984,2	K562	blood:
3	chr6:11827648..11830540-chr6:11831629..11835568,4	K562	blood:
4	chr6:11834747..11836299-chr6:11847370..11849609,2	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10947602	0.89[ASN][1000 genomes]
rs1883854	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1883855	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1883857	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2002735	0.81[AMR][1000 genomes]
rs2103738	0.94[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2327487	0.82[JPT][hapmap]
rs4520010	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4521583	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711437	0.94[ASN][1000 genomes]
rs6457919	0.90[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6916995	0.95[ASN][1000 genomes]
rs6918179	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6919715	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6921169	0.94[ASN][1000 genomes]
rs6931106	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7450581	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7745004	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7765341	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767287	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769049	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs932441	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357210	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357211	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9368918	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9462160	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs9470271	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9394332	ELOVL2	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11831000-11835400	Weak transcription	Left Ventricle	heart
2	chr6:11833800-11835200	Flanking Active TSS	K562	blood
3	chr6:11833800-11835600	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:11833800-11835800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:11833800-11835800	Enhancers	Liver	Liver
6	chr6:11833800-11836000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:11834000-11836000	Enhancers	Fetal Heart	heart
8	chr6:11834200-11835200	Weak transcription	Pancreas	Pancrea
9	chr6:11834200-11835400	Weak transcription	Esophagus	oesophagus
10	chr6:11834200-11835400	Weak transcription	Gastric	stomach
11	chr6:11834200-11836400	Enhancers	Fetal Lung	lung
12	chr6:11834400-11835800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:11835000-11835200	Enhancers	Stomach Mucosa	stomach

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