Variant report

Variant	rs6921169
Chromosome Location	chr6:11851566-11851567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11851522..11853386-chr6:11855084..11856597,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10947602	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947610	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11755122	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1883854	0.93[ASN][1000 genomes]
rs1883855	0.91[ASN][1000 genomes]
rs1883857	0.85[ASN][1000 genomes]
rs2002736	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2015055	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4520010	0.94[ASN][1000 genomes]
rs4521583	0.92[ASN][1000 genomes]
rs4526189	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711437	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713966	0.85[AMR][1000 genomes]
rs6457919	0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6916995	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7450581	0.92[ASN][1000 genomes]
rs7745004	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7765341	0.94[ASN][1000 genomes]
rs7767287	0.93[ASN][1000 genomes]
rs7769049	0.89[ASN][1000 genomes]
rs932441	0.93[ASN][1000 genomes]
rs9357210	0.93[ASN][1000 genomes]
rs9394332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9462160	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9470271	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11851600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11847200-11854600	Weak transcription	Gastric	stomach
5	chr6:11848400-11851600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:11849000-11853800	Weak transcription	Stomach Mucosa	stomach
7	chr6:11849000-11854000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:11850000-11851600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11850000-11851800	Weak transcription	Osteobl	bone
11	chr6:11850000-11852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
13	chr6:11850200-11852000	Weak transcription	NH-A	brain
14	chr6:11850200-11852600	Weak transcription	Liver	Liver
15	chr6:11850200-11852600	Weak transcription	Fetal Lung	lung
16	chr6:11850400-11851600	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
18	chr6:11850800-11852200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:11851000-11852400	Enhancers	Hela-S3	cervix
20	chr6:11851000-11852400	Enhancers	NHDF-Ad	bronchial
21	chr6:11851000-11852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:11851000-11853000	Enhancers	HSMM	muscle
23	chr6:11851200-11852000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:11851200-11852000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:11851200-11852000	Enhancers	HSMMtube	muscle
26	chr6:11851200-11852200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:11851200-11852600	Enhancers	HMEC	breast
28	chr6:11851400-11851800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:11851400-11851800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:11851400-11851800	Enhancers	GM12878-XiMat	blood
31	chr6:11851400-11852000	Enhancers	NHEK	skin
32	chr6:11851400-11852200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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