Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11844746..11849186-chr6:12011499..12014000,4	MCF-7	breast:
2	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10947602	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947610	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11755122	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1883854	0.92[ASN][1000 genomes]
rs1883855	0.90[ASN][1000 genomes]
rs1883857	0.84[ASN][1000 genomes]
rs2002736	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2015055	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2103738	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs4520010	0.93[ASN][1000 genomes]
rs4521583	0.91[ASN][1000 genomes]
rs4526189	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711437	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713966	0.84[AMR][1000 genomes]
rs6457919	0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs6916995	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6921169	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7450581	0.91[ASN][1000 genomes]
rs7765341	0.93[ASN][1000 genomes]
rs7767287	0.92[ASN][1000 genomes]
rs7769049	0.88[ASN][1000 genomes]
rs932441	0.92[ASN][1000 genomes]
rs9357210	0.92[ASN][1000 genomes]
rs9394332	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9462160	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs9470271	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7745004	C6orf105	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844400-11846200	Weak transcription	Liver	Liver
2	chr6:11844600-11854000	Weak transcription	NHLF	lung

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