Variant report

Variant	rs2015055
Chromosome Location	chr6:11865245-11865246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947602	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755122	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1883854	0.84[ASN][1000 genomes]
rs1883855	0.85[ASN][1000 genomes]
rs2002735	0.87[ASN][1000 genomes]
rs2002736	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4520010	0.83[ASN][1000 genomes]
rs4521583	0.85[ASN][1000 genomes]
rs4526189	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457919	0.85[ASN][1000 genomes]
rs6921169	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7450581	0.85[ASN][1000 genomes]
rs7745004	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7765341	0.83[ASN][1000 genomes]
rs7767287	0.84[ASN][1000 genomes]
rs7769049	0.82[ASN][1000 genomes]
rs932441	0.84[ASN][1000 genomes]
rs9357210	0.84[ASN][1000 genomes]
rs9470271	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11859800-11867000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11863200-11868600	Weak transcription	Fetal Stomach	stomach
4	chr6:11864800-11865600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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