Variant report

Variant	rs10952672
Chromosome Location	chr7:146843505-146843506
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf33-8	chr7:146843434-146843848	NONHSAT123953

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10261858	0.86[CEU][hapmap]
rs10263495	0.92[ASN][1000 genomes]
rs10266913	0.92[CEU][hapmap]
rs10268252	0.88[CEU][hapmap]
rs10276955	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10278454	0.90[ASN][1000 genomes]
rs10952673	0.89[CEU][hapmap]
rs12532448	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12666338	0.85[CEU][hapmap]
rs12670106	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12671954	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1496536	0.89[CEU][hapmap]
rs1496537	0.89[CEU][hapmap]
rs4512308	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs4559158	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4725704	0.89[CEU][hapmap]
rs4725706	0.82[ASN][1000 genomes]
rs4726821	0.87[ASN][1000 genomes]
rs4726822	0.92[CEU][hapmap]
rs62481835	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6959187	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6961500	0.85[CEU][hapmap]
rs7385969	0.89[CEU][hapmap]
rs7789511	0.86[CEU][hapmap]
rs7791332	0.96[CEU][hapmap]
rs7792380	0.96[CEU][hapmap]
rs7807716	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs903899	0.95[ASN][1000 genomes]
rs903900	0.89[CEU][hapmap]
rs924147	0.99[ASN][1000 genomes]
rs9640235	0.82[CEU][hapmap];0.84[ASN][1000 genomes]
rs9640492	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146838000-146844600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:146843200-146843600	Enhancers	Fetal Muscle Trunk	muscle
3	chr7:146843200-146843600	Enhancers	Fetal Muscle Leg	muscle
4	chr7:146843200-146845800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:146843400-146843600	Enhancers	H1 Cell Line	embryonic stem cell

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