Variant report

Variant	rs10263495
Chromosome Location	chr7:146838939-146838940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10085697	0.89[JPT][hapmap]
rs1018073	0.90[JPT][hapmap]
rs1018074	0.93[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs10240438	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs10255525	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs10261858	0.89[JPT][hapmap]
rs10266913	0.94[JPT][hapmap]
rs10268252	1.00[JPT][hapmap]
rs10273775	0.81[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs10276955	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs10278454	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10279761	0.83[EUR][1000 genomes]
rs10500171	1.00[CEU][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs10952672	0.92[ASN][1000 genomes]
rs10952673	0.94[JPT][hapmap]
rs10952674	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11768562	0.82[CEU][hapmap]
rs12532448	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12666338	0.84[JPT][hapmap]
rs12670106	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12671954	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1390717	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1390718	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1390720	0.81[CEU][hapmap]
rs1390722	0.81[CEU][hapmap]
rs1496536	0.95[JPT][hapmap]
rs1496537	0.95[JPT][hapmap]
rs1496540	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1496541	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs1496542	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs1496543	1.00[CEU][hapmap]
rs1826843	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1908765	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs2132593	0.82[CEU][hapmap]
rs2191271	0.84[JPT][hapmap]
rs2888441	0.83[EUR][1000 genomes]
rs3807570	0.94[JPT][hapmap]
rs3953445	0.81[EUR][1000 genomes]
rs4146047	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4512308	0.82[JPT][hapmap]
rs4559158	0.95[JPT][hapmap]
rs4725704	0.94[JPT][hapmap]
rs4725706	0.80[ASN][1000 genomes]
rs4726818	0.84[JPT][hapmap]
rs4726821	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4726822	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs62481835	0.88[ASN][1000 genomes]
rs6959187	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6961500	0.95[JPT][hapmap]
rs6965650	0.84[JPT][hapmap]
rs6968736	0.82[CEU][hapmap]
rs6974986	0.81[EUR][1000 genomes]
rs7385969	0.95[JPT][hapmap]
rs7783508	0.85[EUR][1000 genomes]
rs7789511	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs7790730	1.00[CEU][hapmap]
rs7791332	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7792380	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7795067	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7799140	1.00[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7801686	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs7802451	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7805359	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs7806761	0.95[JPT][hapmap]
rs7807716	0.94[JPT][hapmap]
rs7811513	0.84[JPT][hapmap]
rs903898	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs903899	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs903900	0.94[JPT][hapmap]
rs924147	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9640235	0.88[ASN][1000 genomes]
rs9640492	0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9640495	0.93[EUR][1000 genomes]
rs987419	1.00[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146837600-146841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:146838000-146844600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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