Variant report

Variant	rs10085697
Chromosome Location	chr7:146897211-146897212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1018073	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1018074	0.91[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10240438	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs10255525	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10261858	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10263495	0.89[JPT][hapmap]
rs10266913	0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs10268252	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10273775	0.86[CHB][hapmap];0.98[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10274224	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10274399	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276955	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs10278454	0.88[JPT][hapmap]
rs10279761	0.93[ASN][1000 genomes]
rs10500171	0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10952673	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10952674	0.83[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap]
rs12532448	0.94[JPT][hapmap]
rs12666338	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs12670106	0.94[JPT][hapmap]
rs12671954	1.00[JPT][hapmap]
rs12703883	0.96[ASN][1000 genomes]
rs1390717	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1390718	0.89[JPT][hapmap]
rs1496536	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1496537	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1496539	0.96[CEU][hapmap]
rs1496540	0.87[ASN][1000 genomes]
rs1496541	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1496542	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs1826843	0.83[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs1908765	0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs2036118	0.81[CEU][hapmap]
rs2888441	0.92[ASN][1000 genomes]
rs3807570	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs4146047	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs4512308	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4559158	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4725704	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs4725706	0.84[AMR][1000 genomes]
rs4726818	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4726822	0.81[CEU][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap]
rs6954110	0.99[ASN][1000 genomes]
rs6959187	0.94[JPT][hapmap];0.80[MEX][hapmap]
rs6961500	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6965650	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6974986	1.00[ASN][1000 genomes]
rs7385969	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7783508	0.95[ASN][1000 genomes]
rs7789511	1.00[JPT][hapmap]
rs7791332	0.87[JPT][hapmap]
rs7792380	0.89[JPT][hapmap];0.81[MEX][hapmap]
rs7795067	0.91[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7799140	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7801686	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7805359	0.91[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs7806761	0.84[JPT][hapmap]
rs7807716	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7811513	0.84[JPT][hapmap]
rs903898	0.89[JPT][hapmap]
rs903900	0.91[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs924147	0.93[JPT][hapmap]
rs9640492	0.95[JPT][hapmap];0.81[MEX][hapmap]
rs9640495	0.86[ASN][1000 genomes]
rs987419	0.91[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10085697	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146897000-146897600	Enhancers	Fetal Brain Female	brain
2	chr7:146897000-146897600	Enhancers	Fetal Lung	lung
3	chr7:146897000-146897600	Enhancers	Ovary	ovary
4	chr7:146897200-146897600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:146897200-146897600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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