Variant report

Variant	rs924147
Chromosome Location	chr7:146842515-146842516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:146842475-146842654	H1-hESC	embryonic stem cell:	n/a	n/a
2	CEBPB	chr7:146842223-146842579	H1-hESC	embryonic stem cell:	n/a	n/a
3	TCF12	chr7:146842265-146842635	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr7:146842469-146842672	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr7:146842403-146842603	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr7:146842401-146842612	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTBP2	chr7:146842373-146842945	H1-hESC	embryonic stem cell:	n/a	n/a
8	JUND	chr7:146842390-146842611	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
DUTP3	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10085697	0.93[JPT][hapmap]
rs1018073	0.88[JPT][hapmap]
rs1018074	0.92[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs10240438	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10255525	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs10261858	0.94[JPT][hapmap]
rs10263495	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10266913	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10268252	1.00[JPT][hapmap]
rs10273775	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10276955	1.00[JPT][hapmap]
rs10278454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10279761	0.84[EUR][1000 genomes]
rs10500171	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10952672	0.99[ASN][1000 genomes]
rs10952673	0.93[JPT][hapmap]
rs10952674	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs12532448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12666338	0.88[JPT][hapmap]
rs12670106	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12671954	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1390717	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1390718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1496536	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1496537	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1496540	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1496541	0.92[CEU][hapmap];0.94[JPT][hapmap]
rs1496542	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs1496543	1.00[CEU][hapmap]
rs1826843	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1908765	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2191271	0.81[JPT][hapmap]
rs2888441	0.84[EUR][1000 genomes]
rs3807570	1.00[JPT][hapmap]
rs3953445	0.81[EUR][1000 genomes]
rs4146047	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4512308	0.85[JPT][hapmap]
rs4559158	0.93[JPT][hapmap]
rs4725704	1.00[JPT][hapmap]
rs4725706	0.82[ASN][1000 genomes]
rs4726818	0.87[JPT][hapmap]
rs4726821	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4726822	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs62481835	0.86[ASN][1000 genomes]
rs6959187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6961500	1.00[JPT][hapmap]
rs6965650	0.87[JPT][hapmap]
rs6974986	0.82[EUR][1000 genomes]
rs7385969	1.00[JPT][hapmap]
rs7783508	0.86[EUR][1000 genomes]
rs7789511	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7790730	1.00[CEU][hapmap]
rs7791332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7792380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7795067	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7799140	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7801686	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs7802451	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7805359	0.93[JPT][hapmap]
rs7806761	0.93[JPT][hapmap]
rs7807716	1.00[JPT][hapmap]
rs7811513	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs903898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs903899	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs903900	1.00[JPT][hapmap]
rs9640235	0.84[ASN][1000 genomes]
rs9640492	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9640495	0.94[EUR][1000 genomes]
rs987419	1.00[CEU][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146838000-146844600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:146841200-146843200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:146841400-146843000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:146841400-146843200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:146841600-146843200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:146841800-146842600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:146841800-146843400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:146842000-146842600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:146842000-146842800	Enhancers	HUES64 Cell Line	embryonic stem cell

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