Variant report

Variant	rs2191271
Chromosome Location	chr7:146808114-146808115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1018074	0.87[CHB][hapmap]
rs10240438	0.87[CHB][hapmap]
rs10255525	0.86[CHB][hapmap]
rs10261858	0.87[CHB][hapmap]
rs10263495	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10266913	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10268252	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10273775	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10276955	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10278454	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10500171	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10952673	0.82[CHB][hapmap]
rs12532448	0.82[JPT][hapmap]
rs12671954	0.83[JPT][hapmap]
rs1390717	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1390718	0.83[JPT][hapmap]
rs1496536	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1496537	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1496541	0.87[CHB][hapmap]
rs1496542	0.87[CHB][hapmap]
rs1908765	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs3807570	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4146047	0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4416747	0.86[ASN][1000 genomes]
rs4725704	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4726818	0.87[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4726821	0.82[EUR][1000 genomes]
rs4726822	0.83[JPT][hapmap]
rs6464784	0.95[ASN][1000 genomes]
rs6958777	0.88[ASN][1000 genomes]
rs6959187	0.83[JPT][hapmap]
rs6961500	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6962089	0.91[CEU][hapmap]
rs6968536	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs7385969	0.96[CHB][hapmap];0.84[JPT][hapmap]
rs7791332	0.86[JPT][hapmap]
rs7792380	0.83[JPT][hapmap]
rs7795067	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7799140	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs7801686	0.87[CHB][hapmap]
rs7802451	0.84[EUR][1000 genomes]
rs7805359	0.87[CHB][hapmap]
rs7806761	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7807716	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7811513	1.00[CEU][hapmap];0.96[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs903898	0.84[JPT][hapmap]
rs903899	0.84[EUR][1000 genomes]
rs903900	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs924147	0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs987419	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv933332	chr7:146805138-146826061	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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