Variant report

Variant	rs4146047
Chromosome Location	chr7:146834005-146834006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146826412..146830203-chr7:146830446..146834436,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10085697	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1018073	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1018074	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10240438	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10255525	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10261858	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10263495	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10266913	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10268252	0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs10273775	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10274224	0.88[JPT][hapmap]
rs10276955	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10278454	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10279761	0.82[EUR][1000 genomes]
rs10500171	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs10952673	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10952674	0.90[JPT][hapmap]
rs11768562	0.81[CEU][hapmap]
rs12532448	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12666338	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs12670106	0.89[JPT][hapmap]
rs12671954	1.00[JPT][hapmap]
rs1390717	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1390718	1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap]
rs1390720	0.81[CEU][hapmap]
rs1390722	0.81[CEU][hapmap]
rs1496536	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496537	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496540	0.83[EUR][1000 genomes]
rs1496541	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1496542	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs1496543	1.00[CEU][hapmap]
rs1826843	0.94[JPT][hapmap]
rs1908765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs2132593	0.81[CEU][hapmap]
rs2191271	0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap]
rs2888441	0.82[EUR][1000 genomes]
rs3807570	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3953445	0.82[EUR][1000 genomes]
rs4512308	0.94[JPT][hapmap]
rs4559158	0.90[JPT][hapmap]
rs4725704	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs4726818	0.90[JPT][hapmap];0.82[TSI][hapmap]
rs4726821	0.95[EUR][1000 genomes]
rs4726822	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6959187	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6961500	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6965650	0.94[JPT][hapmap]
rs6968536	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs6968736	0.81[CEU][hapmap]
rs6974986	0.80[EUR][1000 genomes]
rs7385969	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7783508	0.84[EUR][1000 genomes]
rs7789511	0.94[JPT][hapmap]
rs7790730	1.00[CEU][hapmap]
rs7791332	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7792380	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7795067	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs7799140	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7801686	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7802451	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7805359	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7806761	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs7807716	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7811513	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs903898	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs903899	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs903900	0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs924147	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9640492	0.90[JPT][hapmap]
rs9640495	0.93[EUR][1000 genomes]
rs987419	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4146047	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146831200-146836200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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