Variant report

Variant	rs4725704
Chromosome Location	chr7:146868611-146868612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10085697	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs1018073	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs1018074	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10240438	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10255525	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10261858	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10263495	0.94[JPT][hapmap]
rs10266913	0.93[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap]
rs10268252	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap]
rs10273775	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10274224	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs10276955	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10278454	0.94[JPT][hapmap]
rs10279761	0.81[ASN][1000 genomes]
rs10500171	0.95[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10952672	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10952673	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs10952674	0.90[JPT][hapmap];0.86[MEX][hapmap]
rs12532448	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12666338	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs12670106	0.81[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12671954	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390717	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1390718	0.94[JPT][hapmap]
rs1496536	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496537	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496540	0.82[ASN][1000 genomes]
rs1496541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1496542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1826843	0.82[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs1908765	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2191271	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs3807570	0.91[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap]
rs4146047	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4512308	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4559158	0.89[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4725706	0.82[AMR][1000 genomes]
rs4726818	0.90[JPT][hapmap]
rs4726822	0.93[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap]
rs62481835	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6959187	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6961500	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6965650	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs6968536	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs7385969	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7789511	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs7791332	0.92[CEU][hapmap];0.94[JPT][hapmap]
rs7792380	0.81[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs7795067	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7799140	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7801686	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7802451	0.99[ASN][1000 genomes]
rs7805359	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7806761	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7807716	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7811513	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs903898	0.94[JPT][hapmap]
rs903900	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap]
rs924147	1.00[JPT][hapmap]
rs9640492	0.90[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs9640495	0.86[ASN][1000 genomes]
rs987419	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521548	chr7:146867339-146871913	Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4725704	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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