Variant report

Variant	rs1908765
Chromosome Location	chr7:146884426-146884427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10085697	0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10085840	0.85[AMR][1000 genomes]
rs1018073	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1018074	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10240438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs10255525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10261858	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10263495	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes]
rs10266913	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10268252	0.91[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs10273775	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10274224	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10274399	0.88[ASN][1000 genomes]
rs10276955	0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10278454	1.00[CEU][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs10279761	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500171	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10952673	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs10952674	0.90[JPT][hapmap]
rs11768562	0.81[CEU][hapmap]
rs12532448	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12666338	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs12670106	0.89[JPT][hapmap]
rs12671954	1.00[JPT][hapmap]
rs12703883	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1390717	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1390718	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs1390720	0.81[CEU][hapmap]
rs1390722	0.81[CEU][hapmap]
rs1496536	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496537	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496540	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1496541	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1496542	0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1496543	1.00[CEU][hapmap]
rs1826843	0.94[JPT][hapmap]
rs2132593	0.81[CEU][hapmap]
rs2191271	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2888441	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807570	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4146047	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs4512308	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4559158	0.87[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4725704	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs4726818	0.90[JPT][hapmap]
rs4726821	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4726822	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs6954110	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6959187	1.00[JPT][hapmap]
rs6961500	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6965650	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs6968536	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6968736	0.81[CEU][hapmap]
rs6974986	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7385969	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7783508	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7789511	0.94[JPT][hapmap]
rs7790730	1.00[CEU][hapmap]
rs7791332	0.94[JPT][hapmap]
rs7792380	0.94[JPT][hapmap]
rs7795067	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7799140	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7801686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs7802451	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7805359	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7806761	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7807716	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7811513	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs903898	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs903899	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs903900	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs924147	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs9640492	0.90[JPT][hapmap]
rs9640495	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs987419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1908765	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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