Variant report

Variant	rs7783508
Chromosome Location	chr7:146897589-146897590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085697	0.95[ASN][1000 genomes]
rs10085840	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1018073	0.92[ASN][1000 genomes]
rs1018074	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10263495	0.85[EUR][1000 genomes]
rs10273775	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274224	0.93[ASN][1000 genomes]
rs10274399	0.92[ASN][1000 genomes]
rs10278454	0.82[EUR][1000 genomes]
rs10279761	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500171	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12703883	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1496540	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2888441	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146047	0.84[EUR][1000 genomes]
rs4512308	0.86[ASN][1000 genomes]
rs4559158	0.83[ASN][1000 genomes]
rs4726821	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6954110	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6974986	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795067	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799140	0.85[EUR][1000 genomes]
rs7802451	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7805359	0.95[ASN][1000 genomes]
rs7807716	0.98[ASN][1000 genomes]
rs903899	0.85[EUR][1000 genomes]
rs924147	0.86[EUR][1000 genomes]
rs9640495	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146897000-146897600	Enhancers	Fetal Brain Female	brain
2	chr7:146897000-146897600	Enhancers	Fetal Lung	lung
3	chr7:146897000-146897600	Enhancers	Ovary	ovary
4	chr7:146897200-146897600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:146897200-146897600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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