Variant report

Variant	rs10274224
Chromosome Location	chr7:146894068-146894069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085697	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1018073	0.96[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1018074	0.87[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs10240438	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs10255525	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10261858	0.93[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10266913	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10268252	0.83[JPT][hapmap]
rs10273775	0.81[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10274399	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276955	0.88[JPT][hapmap]
rs10278454	0.82[JPT][hapmap]
rs10279761	0.93[ASN][1000 genomes]
rs10500171	0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10952673	0.81[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10952674	0.89[JPT][hapmap]
rs12532448	0.88[JPT][hapmap]
rs12666338	0.93[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs12670106	0.89[JPT][hapmap]
rs12671954	0.89[JPT][hapmap]
rs12703883	0.98[ASN][1000 genomes]
rs1390717	0.82[CHB][hapmap]
rs1390718	0.83[JPT][hapmap]
rs1496536	0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1496537	0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1496539	0.93[CEU][hapmap]
rs1496540	0.87[ASN][1000 genomes]
rs1496541	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1496542	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1826843	0.94[JPT][hapmap]
rs1908765	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2888441	0.92[ASN][1000 genomes]
rs3807570	0.88[JPT][hapmap]
rs4146047	0.88[JPT][hapmap]
rs4512308	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4559158	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4725704	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4726818	0.89[JPT][hapmap]
rs4726822	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs62481835	0.85[EUR][1000 genomes]
rs6954110	1.00[ASN][1000 genomes]
rs6959187	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs6961500	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6965650	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6974986	0.99[ASN][1000 genomes]
rs7385969	0.84[JPT][hapmap]
rs7783508	0.93[ASN][1000 genomes]
rs7789511	0.89[JPT][hapmap]
rs7791332	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7792380	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs7795067	0.86[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs7799140	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7801686	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs7805359	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7807716	0.93[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs903900	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9640492	0.89[JPT][hapmap]
rs9640495	0.86[ASN][1000 genomes]
rs987419	0.87[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146890600-146897200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:146894000-146894800	Active TSS	Hela-S3	cervix

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